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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAAAGAAATAGTTGCGCAAAATAAAGGGAATACTGTGCTTGAATTGCAGCAAAGATCTATTGAATTCAGTTCCATTATACAAAGACATCAATCGATGAAgtgagtggaagatcttgcaattattgaggataattttgtattccgtagttttgtcaaagaaaatagtaatatggataatgctggtgtatgcgcag

Basic information

species Zea mays
transcript GRMZM2G030144_T01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030144_T03 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os06g07090.1 (Oryza sativa), 5'ss of exon 13
TAAAAGAAATAGTTGCGCAAAATAAAGGGAATACTGTGCTTGAATTGCAGCAAAGATCTATTGAATTCAGTTCCATTATACAAAGACATCAATCGATGAAgtgagtggaagatcttgcaattattgaggataattt-tgtattccgtagttttgtcaaagaaaatagtaatatggataatgctggtgtatgcgcag
|||| ||||||||||| || |||||||||||||||||||||||| | || || || || ||||||||||  ||||||||||| || ||||| || || ||||| |||  ||||  ||| |||  || || |  ||| | || |   |   ||| |  |||| |  | |||  | ||  |||||| ||||||  |||
TAAAGGAAATAGTTGCACAGAATAAAGGGAATACTGTGCTTGAACTACAACAGAGGTCAATTGAATTCAACTCCATTATACAGAGGCATCAGTCTATAAAgtgggtgacagattctgccattgctgtgggtgctttctctaatatatttgtttctgtaagatag-attaaccttgaggatgctgttgtatgaacag

upper sequence: GRMZM2G030144_T03 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA01G03890.1 (Glycine max), 5'ss of exon 13
TAAAAGAAATAGTTGCGCAAAATAAAGGGAATACTGTGCTTGAATTGCAGCAAAGATCTATTGAATTCAGTTCCATTATACAAAGACATCAATCGATGAAgtgagtggaagatcttgcaattattgaggataattttgtattccgtagttttgtcaaagaaaatagtaatatggataatgctggtgtatgcgcag
| ||||||||  |||  ||    |||||||    |||||| ||||||||||| ||| |||||||||||| ||| |||||   ||  ||||||   || | ||||| |  |  |  |    ||||| |   ||  |    ||   | | || |  ||        | |   ||    ||  |||   | || ||||
TCAAAGAAATTATTGTTCAGTTCAAAGGGAGCTTTGTGCTAGAATTGCAGCAGAGAGCTATTGAATTCAATTCGATTATTGCAAAGCATCAAAATATTAGgtgag-gttaattaatctgcttatt-atattatatcaagatcatggaattgtacca-------cactttcataagaaa--ctgtcat-tgtgcag

upper sequence: GRMZM2G030144_T03 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA02G03800.1 (Glycine max), 5'ss of exon 12
TAAAAGAAATAGTTGCGCAAAATAAAGGGAATACTGTGCTTGAATTGCAGCAAAGATCTATTGAATTCAGTTCCATTATACAAAGACATCAATCGATGAAgtgagtggaagatcttgcaattattgaggataattttgtattccgtagttttgtcaaagaaaatagtaatatggataatgctggtgtatgcgcag
| ||||||||  |||  ||    |||||||    |||||| ||||||||||| ||  |||||||||||||||| |||||   ||  ||||||   || | ||||  ||   ||    |   | || |   |   |    ||  || | || |         || | |   ||    ||  |||   | || ||||
TCAAAGAAATTATTGTTCAGTTCAAAGGGAGCTTTGTGCTAGAATTGCAGCAGAGGGCTATTGAATTCAGTTCGATTATTTCAAAGCATCAAAATATTAGgtga--ggttaattaatctgctttttatattgtatcaagatcacggaattgtac-------aacactttcataagaaa--ctgtcat-tgtgcag

upper sequence: GRMZM2G030144_T03 (Zea mays), 5'ss of exon 12
lower sequence: Vv01s0026g00310.t01 (Vitis vinifera), 5'ss of exon 13
TAAAAGAAATAGTTGCGCAAAATAAAGGGAATACTGTGCTTGAATTGCAGCAAAGATCTATTGAATTCAGTTCCATTATACAAAGACATCAATCGATGAAgtgagtggaagatcttgcaattattgaggataattttgtattccgtagttttgtcaaagaaaatagtaatatggataatgctggtgtatgcgcag------------------------
|||  || ||| |||  ||   |||||| |    |||||||||||||||||| ||||| |||||||| | |||||||||    |  ||||||   || | ||  |     ||   |   | ||||  | || |||  ||  |   |   |||  |  ||||| | |  | ||| | |         | |    |                         
TAAGGGATATAATTGTCCAGTGTAAAGGAAGCCTTGTGCTTGAATTGCAGCAGAGATCCATTGAATTTAATTCCATTATTGGGAAGCATCAAAATATCAGgtatgcatttgaaagttgtaatattttgtatcattcagtgcttgatgtcttttccccagaaatttgccacatgtaaagcatatccatcttttaaagaagttctggatgaatgtctacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71433260|gb|DR814310.1|DR814310
EST:     CAAAGATCTATTGAATTCAGTTCCATTATACAAAGACATCAATCGATGAA                         ATCATCTTTGCTTGAACGGATGCCTGTATTGGATGAAGCTAATTATTTGGT
genomic: CAAAGATCTATTGAATTCAGTTCCATTATACAAAGACATCAATCGATGAAgtgagtggaa ... gtatgcgcagATCATCTTTGCTTGAACGGATGCCTGTATTGGATGAAGCTAATTATTTGGT
EST: gi|67021834|gb|CO450583.1|CO450583
EST:     CAAAGATCTATTGAATTCAGTTCCATTATACAAAGACATCAATCGATGAA                         ATCATCTTTGCTTGAACGGATGCCTGTATTGGATGAAGCTAATTATTTGGT
genomic: CAAAGATCTATTGAATTCAGTTCCATTATACAAAGACATCAATCGATGAAgtgagtggaa ... gtatgcgcagATCATCTTTGCTTGAACGGATGCCTGTATTGGATGAAGCTAATTATTTGGT
EST: gi|67037313|gb|CO464163.1|CO464163
EST:     CAAAGATCTATTGAATTCAGTTCCATTATACAAAGACATCAATCGATGAA                         ATCATCTTTGCTTGAACGGATGCCTGTATTGGATGAAGCTAATTATTTGGT
genomic: CAAAGATCTATTGAATTCAGTTCCATTATACAAAGACATCAATCGATGAAgtgagtggaa ... gtatgcgcagATCATCTTTGCTTGAACGGATGCCTGTATTGGATGAAGCTAATTATTTGGT