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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCTGACATGGAACGGGCAGAAGGAGATACCGGTGGGGAATTTGACCCGCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgagttcgtctttcctgatcaattcagatctaggcctctacagtgacgctaggctgtattttgattccaccatccgctggttcttcag

Basic information

species Zea mays
transcript GRMZM2G029566_T01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G029566_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g10310.1 (Oryza sativa), 5'ss of exon 13
GGAGCTGACATGGAACGGGCAGAAGGAGATACCGGTGGGGAATTTGACCCGCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgagttcgtctttcctgatcaattcagatctaggcctct-----------acagt----------gacgctaggctgtattttgattcca-ccatccgc-tggttcttcag
|||||| |||||||| ||||||||||||||| | || || || | |||||||||||||||||||||||| ||||| |||||||||||||  ||||||||||||| |  |  || |   || |||||||  || || |||  ||||           |||            ||  | | ||| ||| ||||| ||| |||||  | || || | |||
GGAGCTAACATGGAATGGGCAGAAGGAGATATCAGTTGGAAACTCGACCCGCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaatctcataagtcttgatcaaaccaaatttagagctcttttcgtctaaaacaaatatctttgaagattccatgctctatcttgatgccatccatctacatgtttttacag

upper sequence: GRMZM2G029566_T03 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA15G12100.1 (Glycine max), 5'ss of exon 13
GGAGCTGACATGGAACGGGCAGAAGGAGATACCGGTGGGGAATTTGACCCGCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgt-actgtgagttcgtctttcctgatcaattcagatctaggcctctacagtgacgctaggctgt--attttgattccaccatccgctggttcttcag-----------
 ||  | || ||||| || || || | | |||| |||      || |     || || || ||||||||||||||||| ||||| || |||| ||||||||| ||  | | ||    | | |  | |   || | | |      ||| | ||  | ||   | |   ||||  ||     ||  | | ||| ||||            
AGAATTAACGTGGAATGGACAAAACGCGGTACCAGTGAATGGGTTAAATAAGAAATTTCTTGAAGATGGAGATGAAGTTATCTTAACTGGATATTGCAAGgttacaatcaattaagatcttc--aacgcctctgttttg-----ctaaaatgctgttatcttttcagtttttcttgagagatttgttagtt-ttcatttcccagtatc

upper sequence: GRMZM2G029566_T03 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA09G01270.2 (Glycine max), 5'ss of exon 12
GGAGCTGACATGGAACGGGCAGAAGGAGATACCGGTGGGGAATTTGACCCGCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgta-ctgtgagttcgtctttcctgatcaattcagatctaggcctctacagtgacgctaggctgtattttgattccaccatccg---ctggttcttcag--
 ||  | |||||||| || || ||     |  | |||    | || |  || || || || ||||||||||| ||||||||||| || |||| |||||||||| |  | | ||    | | |    |   |       | |  |    | |    | |   |  ||    | |     |   |   ||  || || |   
AGAATTAACATGGAATGGACAAAACACAGTGTCAGTGAATGAGTTAAATCGGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatcaattaagatcttcaatgcctcttttgcaaaagtgttgtaattttttcaacttttcatgagaaatttcttagttgtatctaatttttaactg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12972515|gb|BG268020.1|BG268020
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAA
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAA
EST: gi|110933692|gb|EE153918.1|EE153918
EST:     AAGTTCCTAGAAGATGGAGATGGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: AAGTTCCTAGAAGATGGAGAT-GAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|211273148|gb|FL031471.1|FL031471
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|89764160|gb|DY691068.1|DY691068
EST:     CAAGTTCCTAGAAGATGGAGATGAAGTCATCTAGAGCAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: CAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGA-CAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|76920585|gb|DV168249.1|DV168249
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|149099313|gb|EE185349.2|EE185349
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|211273139|gb|FL031462.1|FL031462
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|31355627|gb|CD439984.1|CD439984
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAGGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|113704214|gb|EE681718.1|EE681718
EST:     TGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: TGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|6403389|gb|AW171864.1|AW171864
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCCCCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|148929744|gb|EC876669.2|EC876669
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|29545139|gb|CB605317.1|CB605317
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|211248919|gb|FL466732.1|FL466732
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|71328227|gb|DR800747.1|DR800747
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|148983239|gb|EE029205.2|EE029205
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|33096207|gb|CF056201.1|CF056201
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|78124352|gb|DV542736.1|DV542736
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|211273147|gb|FL031470.1|FL031470
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|60346412|gb|DN213385.1|DN213385
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|149082177|gb|EE171358.2|EE171358
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|211273144|gb|FL031467.1|FL031467
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|213191212|gb|FM191474.1|FM191474
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|211273149|gb|FL031472.1|FL031472
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|83278342|gb|DV942350.1|DV942350
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|148949166|gb|EC894602.2|EC894602
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCCCCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|4730752|gb|AI649918.1|AI649918
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|211274945|gb|FL031473.1|FL031473
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|116829759|gb|EC871644.1|EC871644
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAT                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|211273143|gb|FL031466.1|FL031466
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGKTCTGSCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|4610044|gb|AI600883.1|AI600883
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCCCCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|211059340|gb|FL474462.1|FL474462
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|211273142|gb|FL031465.1|FL031465
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|91052882|gb|EB163300.1|EB163300
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|211273145|gb|FL031468.1|FL031468
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|211273141|gb|FL031464.1|FL031464
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAA                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|149042086|gb|EE047064.2|EE047064
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|211273140|gb|FL031463.1|FL031463
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAA                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|148946153|gb|EC891447.2|EC891447
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCCCCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|116829718|gb|EC871187.1|EC871187
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAT                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|86465953|gb|DY232326.1|DY232326
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|211228559|gb|FL433551.1|FL433551
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|149076832|gb|EE165487.2|EE165487
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 182

GGAGCTGACATGGAACGGGCAGAAGGAGATACCGGTGGGGAATTTGACCCGCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCGGCACTTCCCTGAGCCAACACGTCTTGGCATCAGTTCTCCGGAGTCTCAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 222

GGAGCTGACATGGAACGGGCAGAAGGAGATACCGGTGGGGAATTTGACCCGCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCGGCACTTCCCTGAGCCAACACGTCTTGGCATCAGTTCTCCGGAGTCTCAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 150

GGAGCTGACATGGAACGGGCAGAAGGAGATACCGGTGGGGAATTTGACCCGCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCGGCACTTCCCTGAGCCAACACGTCTTGGCATCAGTTCTCCGGAGTCTCAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1394

GGAGCTGACATGGAACGGGCAGAAGGAGATACCGGTGGGGAATTTGACCCGCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCGGCACTTCCCTGAGCCAACACGTCTTGGCATCAGTTCTCCGGAGTCTCAA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAGCTGACATGGAACGGGCAGAAGGAGATACCGGTGGGGAATTTGACCCGCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgagttcgtctttcctgatcaattcagatctaggcctctacagtgacgctaggctgtattttgattccaccatccgctggttcttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
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