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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCAACTCCATCGTGTATCCTTGGACATCTATTCCCCTCTTGGCTTACTGTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAGgtaaagcttaagcaactatagtttgttgttcgagaaaaaaaactagttttgtatattgtgcaatgtctgaagcttatgttcactgtttcatctgctgcag

Basic information

species Zea mays
transcript GRMZM2G025231_T01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G025231_T01 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os07g24190.2 (Oryza sativa), 5'ss of exon 9
CATCAACTCCATCGTGTATCCTTGGACATCTATTCCCCTCTTGGCTTACTGTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAGgtaaagcttaagcaactatagtttgttgttcgagaaaaaaaactagttttgtatattgtgcaatgtctgaagcttatgttcactgtttcatctgctgcag
||| || ||||||||||||||||  ||||| ||||| ||||||||||||||||||||||| |||||||||||  | || ||||| |||||||||||||||||||| ||||  ||||| |   || |  | ||       |  |   |  |||   ||| ||     || |   ||   ||| |||||   |    |||||
CATTAATTCCATCGTGTATCCTTTTACATCCATTCCACTCTTGGCTTACTGTACATTGCCAGCCATCTGTTTGCTAACTGGGAAGTTTATCACTCCAGAGgtaaatcttattcaactttcagttctgttccgt------atgcagttgctgtgatttgagc-----cttacatttcccttc-ctgttctgttg--tgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32849550|gb|CD989231.1|CD989231
EST:     TACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAG                         CTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
genomic: TACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAGgtaaagctta ... tctgctgcagCTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
EST: gi|94474954|gb|EB703912.1|EB703912
EST:     GGGAAATTTATCACTCCAGAG                         CTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
genomic: GGGAAATTTATCACTCCAGAGgtaaagctta ... tctgctgcagCTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
EST: gi|32849428|gb|CD989109.1|CD989109
EST:     TACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAG                         CTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
genomic: TACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAGgtaaagctta ... tctgctgcagCTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
EST: gi|67012262|gb|CO441011.1|CO441011
EST:     GTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAG                         CTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
genomic: GTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAGgtaaagctta ... tctgctgcagCTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
EST: gi|32833246|gb|CD972924.1|CD972924
EST:     ACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAG                         CTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
genomic: ACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAGgtaaagctta ... tctgctgcagCTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
EST: gi|32835222|gb|CD974900.1|CD974900
EST:     GTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAG                         CTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
genomic: GTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAGgtaaagctta ... tctgctgcagCTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
EST: gi|32833958|gb|CD973636.1|CD973636
EST:     TACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAG                         CTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
genomic: TACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAGgtaaagctta ... tctgctgcagCTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
EST: gi|67029021|gb|CO457770.1|CO457770
EST:     GTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAG                         CTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
genomic: GTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAGgtaaagctta ... tctgctgcagCTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
EST: gi|67014493|gb|CO443242.1|CO443242
EST:     GTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAG                         CTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
genomic: GTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAGgtaaagctta ... tctgctgcagCTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
EST: gi|32856218|gb|CD995899.1|CD995899
EST:     GTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAG                         CTGAATAATGGTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
genomic: GTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAGgtaaagctta ... tctgctgcagCTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
EST: gi|32928606|gb|CF033418.1|CF033418
EST:     GCACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAG                         CTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
genomic: GTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAGgtaaagctta ... tctgctgcagCTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
EST: gi|67018557|gb|CO447306.1|CO447306
EST:     CCTGCCATNNCTGTTTATGTGACAGGGGAAATTTATCACTCCAGAG                         CTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
genomic: CCTGCCAT--CTGTTTAT-TGACA-GGGAAATTTATCACTCCAGAGgtaaagctta ... tctgctgcagCTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
EST: gi|94475064|gb|EB704022.1|EB704022
EST:     GTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAG                         CTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
genomic: GTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAGgtaaagctta ... tctgctgcagCTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
EST: gi|32916441|gb|CF021253.1|CF021253
EST:     GTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAG                         CTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
genomic: GTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAGgtaaagctta ... tctgctgcagCTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
EST: gi|71324690|gb|DR799051.1|DR799051
EST:     GTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAG                         CTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
genomic: GTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAGgtaaagctta ... tctgctgcagCTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT