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GTGCCTACTGGGTGGAAATTTTTTGGGAATTTGATGGATGCTGGAATGTGCTCAATCTGTGGTGAAGAAAGCTTTGGCACTGgtaatatttggcttctggctatcatttctatacatgccaatcacagtagtaaacatgtcaccacctcttgtattgtcatgttagatgggtaaattgtgtt...
species | Zea mays |
transcript | GRMZM2G023289_T01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TGTGGTGAAGAAAGCTTTGGCACTG GGTCTGACCACATTCGTGAGAAAGATGGCATCTGGGCTGTGCTTGCATGGCEST: gi|67020139|gb|CO448888.1|CO448888
genomic: TGTGGTGAAGAAAGCTTTGGCACTGgtaatatttg ... ctttggctagGGTCTGACCACATTCGTGAGAAAGATGGCATCTGGGCTGTGCTTGCATGGC
EST: GATGGATGCTGGAATGTGCTCAATCTGTGGTGAAGAAAGCTTTGGCACTG GGTCTGACCACATTCGTGAGAAAGATGGCATCTGGGCTGTGCTTGCATGGCEST: gi|211190026|gb|FL186116.1|FL186116
genomic: GATGGATGCTGGAATGTGCTCAATCTGTGGTGAAGAAAGCTTTGGCACTGgtaatatttg ... ctttggctagGGTCTGACCACATTCGTGAGAAAGATGGCATCTGGGCTGTGCTTGCATGGC
EST: GATGGATGCTGGAATGTGCTCAATCTGTGGTGAAGAAAGCTTTGGCACTG GGTCTGACCACATTCGTGAGAAAGATGGCATCTGGGCTGTGCTTGCATGGCEST: gi|149060808|gb|EE157260.2|EE157260
genomic: GATGGATGCTGGAATGTGCTCAATCTGTGGTGAAGAAAGCTTTGGCACTGgtaatatttg ... ctttggctagGGTCTGACCACATTCGTGAGAAAGATGGCATCTGGGCTGTGCTTGCATGGC
EST: GATGGATGCTGGAATGTGCTCAATCTGTGGTGAAGAAAGCTTTGGCACTG GGTCTGACCACATTCGTGAGAAAGATGGCATCTGGGCTGTGCTTGCATGGC
genomic: GATGGATGCTGGAATGTGCTCAATCTGTGGTGAAGAAAGCTTTGGCACTGgtaatatttg ... ctttggctagGGTCTGACCACATTCGTGAGAAAGATGGCATCTGGGCTGTGCTTGCATGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCCTACTGGGTGGAAATTTTTTGGGAATTTGATGGATGCTGGAATGTGCTCAATCTGTGGTGAAGAAAGCTTTGGCACTGgtaatatttggcttctggctatcatttctatacatgccaatcacagtagtaaacatgtcaccacctcttgtattgtcatgttagatgggtaaattgtgtt
- - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA