1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
TATTCCAAACTACAATCCAAGAGACATTGTTGCTAACGTCAGGCGGTTGTTGAATGAAGAGTCTACTGTACCAATGCATCCTTGGTATAGGGGATTCAAGgttagtattatgagttgacttttgcagttgcacccaggaataattttgtaaatataactctagaaactattggttgtactaaagcaactttctatgctcaaattgcag
species | Zea mays |
transcript | GRMZM2G021270_T02 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TGAATGAAGAGTCTACTGTACCAATGCATCCTTGGTATAGGGGATTCAAG GGGTCTATAGAGAAGACAGCCAATACCGAAGGEST: gi|211094717|gb|FL034689.1|FL034689
genomic: TGAATGAAGAGTCTACTGTACCAATGCATCCTTGGTATAGGGGATTCAAGgttagtatta ... caaattgcagGGGTCTATAGAGAAGACAGTCAATAC-GAAGG
EST: TGAATGAAGAGTCTACTGTACCAATGCATCCTTGGTATAGGGGATTCAAG GGGTCTATAGAGAAGACAGTCAATACGAAGGTAGCTGGTTCCACGTATACCEST: gi|211094713|gb|FL034685.1|FL034685
genomic: TGAATGAAGAGTCTACTGTACCAATGCATCCTTGGTATAGGGGATTCAAGgttagtatta ... caaattgcagGGGTCTATAGAGAAGACAGTCAATACGAAGGTAGCTGGTTCCACGTATACC
EST: TGAATGAAGAGTCTACTGTACCAATGCATCCTTGGTATAGGGGATTCAAG GGGTCTATAGAGAAGACAGTCAATACGAAGGTAGCTGGTTCCACGTATACCEST: gi|211097187|gb|FL034699.1|FL034699
genomic: TGAATGAAGAGTCTACTGTACCAATGCATCCTTGGTATAGGGGATTCAAGgttagtatta ... caaattgcagGGGTCTATAGAGAAGACAGTCAATACGAAGGTAGCTGGTTCCACGTATACC
EST: TGAATGAAGAGTCTACTGTACCAATGCATCCTTGGTATAGGGGATTCAAG GGGTCTATAGAGAAGACAGTCAATAC-A-GGTAGCTGGTTCCACGTATACCEST: gi|86465874|gb|DY232247.1|DY232247
genomic: TGAATGAAGAGTCTACTGTACCAATGCATCCTTGGTATAGGGGATTCAAGgttagtatta ... caaattgcagGGGTCTATAGAGAAGACAGTCAATACGAAGGTAGCTGGTTCCACGTATACC
EST: TGAATGAAGAGTCTACTGTACCAATGCATCCTTGGTATAGGGGATTCAGG GGGTCTATAGAAAAAACAGTCAATACAAAGGTAGCTGGTTCCACGTATACCEST: gi|211094718|gb|FL034690.1|FL034690
genomic: TGAATGAAGAGTCTACTGTACCAATGCATCCTTGGTATAGGGGATTCAAGgttagtatta ... caaattgcagGGGTCTATAGAGAAGACAGTCAATACGAAGGTAGCTGGTTCCACGTATACC
EST: TGAATGAAGAGTCTACTGTACCAATGCATCCTTGGTATAGGGGATTCAAG GGGTCTATAGAGAAGACAGTCAATACGAAGGTAGCTGGTTCCACGTATACCEST: gi|211094721|gb|FL034693.1|FL034693
genomic: TGAATGAAGAGTCTACTGTACCAATGCATCCTTGGTATAGGGGATTCAAGgttagtatta ... caaattgcagGGGTCTATAGAGAAGACAGTCAATACGAAGGTAGCTGGTTCCACGTATACC
EST: TGAATGAAGAGTCTACTGTACCAATGCATCCTTGGTATAGGGGATTCAAG GGGTCTATAGAGAAGACAGTCAATACGAAGGTAGCTGGTTCCACGTATACCEST: gi|9794356|gb|BE552664.1|BE552664
genomic: TGAATGAAGAGTCTACTGTACCAATGCATCCTTGGTATAGGGGATTCAAGgttagtatta ... caaattgcagGGGTCTATAGAGAAGACAGTCAATACGAAGGTAGCTGGTTCCACGTATACC
EST: TGAATGAAGAGTCTACTGTACCAATGCATCCTTGGTATAGGGGATTCAAG GGGTCTATAGAGAAGACAGTCAATACGAAGGTAGCTGGTTCCACGTATACCEST: gi|211097189|gb|FL034701.1|FL034701
genomic: TGAATGAAGAGTCTACTGTACCAATGCATCCTTGGTATAGGGGATTCAAGgttagtatta ... caaattgcagGGGTCTATAGAGAAGACAGTCAATACGAAGGTAGCTGGTTCCACGTATACC
EST: TGAATGAAGAGTCTACTGTACCAATGCATCCTTGGTATAGGGGATTCAAG GGGTCTATAGAGAAGACAGTCAATACGAAGGTAGCTGGTTCCACGTATACCEST: gi|211094725|gb|FL034697.1|FL034697
genomic: TGAATGAAGAGTCTACTGTACCAATGCATCCTTGGTATAGGGGATTCAAGgttagtatta ... caaattgcagGGGTCTATAGAGAAGACAGTCAATACGAAGGTAGCTGGTTCCACGTATACC
EST: TGAATGAAGAGTCTACTGTACCAATGCATCCTTGGTATAGGGGATTCAAG GGGTCTATAGAGAAGACAGTCAATACGAAGGTAGCTGGTTCCACGTATACC
genomic: TGAATGAAGAGTCTACTGTACCAATGCATCCTTGGTATAGGGGATTCAAGgttagtatta ... caaattgcagGGGTCTATAGAGAAGACAGTCAATACGAAGGTAGCTGGTTCCACGTATACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATTCCAAACTACAATCCAAGAGACATTGTTGCTAACGTCAGGCGGTTGTTGAATGAAGAGTCTACTGTACCAATGCATCCTTGGTATAGGGGATTCAAGgttagtattatgagttgacttttgcagttgcacccaggaataattttgtaaatataactctagaaactattggttgtactaaagcaactttctatgctcaaattgcag
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