1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GTACCGTTGACTGGTCTGAAGACACCATTTCGCGATGGATATGTTAGAGATTTAGCCGAGGAAGTTCTAAAACTGGCCAAGgttagtaaattagagtgctttgctatggtttccttatttttttccttgaagcaatgccaagttcagagaaatgttcgtactaacgtttgtgttgccctaaccacag
species | Zea mays |
transcript | GRMZM2G020096_T01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: GCGATGGATATGTTAGAGATTTAGCCGAGGAAGTTCTAAAACTGGCCAAG AATGGATTGGAAAGAAGAGGCATACAAGGAGGCTCGGTTTCCTTAGAGAGGEST: gi|22543186|gb|BU093624.1|BU093624
genomic: GCGATGGATATGTTAGAGATTTAGCCGAGGAAGTTCTAAAACTGGCCAAGgttagtaaat ... ctaaccacagAATGGATTGGAAAGAAGAGG-ATACAAGGAGG-TCGGTTTCCTTAGAGAGG
EST: GCGATGGATATGTTAGAGATTTAGCCGAGGAAGTTCTAAAACTGGCCAAG AATGGATTGGAAAGAAGAGGATACAAGGAGGTCGGTTTCCTTAGAGAGGTTEST: gi|113836047|gb|DW957174.1|DW957174
genomic: GCGATGGATATGTTAGAGATTTAGCCGAGGAAGTTCTAAAACTGGCCAAGgttagtaaat ... ctaaccacagAATGGATTGGAAAGAAGAGGATACAAGGAGGTCGGTTTCCTTAGAGAGGTT
EST: AAGTTCTAAAACTGGCCAAG AATGGATTGGAAAGAAGAGGATACAAGGAGGTCGGTTTCCTTAGAGAGGTTEST: gi|89251366|gb|DY623152.1|DY623152
genomic: AAGTTCTAAAACTGGCCAAGgttagtaaat ... ctaaccacagAATGGATTGGAAAGAAGAGGATACAAGGAGGTCGGTTTCCTTAGAGAGGTT
EST: GCGATGGATATGTTAGAGATTTAGCCGAGGAAGTTCTAAAACTGGCCAAG AATGGATTGGAAAGAAGAGGATACAAGGAGGTCGGTTTCCTTAGAGAGGTTEST: gi|78544507|gb|DV622005.1|DV622005
genomic: GCGATGGATATGTTAGAGATTTAGCCGAGGAAGTTCTAAAACTGGCCAAGgttagtaaat ... ctaaccacagAATGGATTGGAAAGAAGAGGATACAAGGAGGTCGGTTTCCTTAGAGAGGTT
EST: GCGATGGATATGTTAGAGATTTAGCCGAGGAAGTTCTAAAACTGGCCAAG AATGGATTGGAAAGAAGAGGATACAAGGAGGTCGGTTTCCTTAGAGAGGTTEST: gi|91048671|gb|EB159089.1|EB159089
genomic: GCGATGGATATGTTAGAGATTTAGCCGAGGAAGTTCTAAAACTGGCCAAGgttagtaaat ... ctaaccacagAATGGATTGGAAAGAAGAGGATACAAGGAGGTCGGTTTCCTTAGAGAGGTT
EST: GCGATGGATATGTTAGAGATTTAGCCGAGGAAGTTCTAAAACTGGCCAAG AATGGATTGGAAAGAAGAGGATACAAGGAGGTCGGTTTCCTTAGAGAGGTTEST: gi|211306279|gb|FL001392.1|FL001392
genomic: GCGATGGATATGTTAGAGATTTAGCCGAGGAAGTTCTAAAACTGGCCAAGgttagtaaat ... ctaaccacagAATGGATTGGAAAGAAGAGGATACAAGGAGGTCGGTTTCCTTAGAGAGGTT
EST: GCGATGGATATGTTAGAGATTTAGCCGAGGAAGTTCTAAAACTGGCCAAG AATGGATTGGAAAGAAGAGGATACAAGGAGGTCGGTTTCCTTAGAGAGGTTEST: gi|60345665|gb|DN212638.1|DN212638
genomic: GCGATGGATATGTTAGAGATTTAGCCGAGGAAGTTCTAAAACTGGCCAAGgttagtaaat ... ctaaccacagAATGGATTGGAAAGAAGAGGATACAAGGAGGTCGGTTTCCTTAGAGAGGTT
EST: GCGATGGATATGTTAGAGATTTAGCCGAGGAAGTTCTAAAACTGGCCAAG AATGGATTGGAAAGAAGAGGATACAAGGAGGTCGGTTTCCTTAGAGAGGTTEST: gi|18660951|gb|BM501134.1|BM501134
genomic: GCGATGGATATGTTAGAGATTTAGCCGAGGAAGTTCTAAAACTGGCCAAGgttagtaaat ... ctaaccacagAATGGATTGGAAAGAAGAGGATACAAGGAGGTCGGTTTCCTTAGAGAGGTT
EST: GCGATGGATATNTTAGAGATTTAGCCGAGGAAGTTCTAAAACTGGCCAAG AATGGATTGGAAAGAAGAGGATACAAGGAGGTCGGTTTCCTTAGAGANGTT
genomic: GCGATGGATATGTTAGAGATTTAGCCGAGGAAGTTCTAAAACTGGCCAAGgttagtaaat ... ctaaccacagAATGGATTGGAAAGAAGAGGATACAAGGAGGTCGGTTTCCTTAGAGAGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACCGTTGACTGGTCTGAAGACACCATTTCGCGATGGATATGTTAGAGATTTAGCCGAGGAAGTTCTAAAACTGGCCAAGgttagtaaattagagtgctttgctatggtttccttatttttttccttgaagcaatgccaagttcagagaaatgttcgtactaacgtttgtgttgccctaaccacag
- - - - - - - - - - - - - - - - GATGGA