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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTCCCACACAGTTCCAACGATTTTGGCTGTGGGCCAAGCGACAAAACCATACTTACCGACCTAACAGGCCATTGTGTCCTCAAGACGAAGCGCATACTgtaagatgattttgttacacattgagttggacaaaacacaaaaggatgccttggcagtttttaggccattttttaattcttggaaagctgcatgatgcac...

Basic information

species Zea mays
transcript GRMZM2G018508_T02
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G018508_T03 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os07g06950.1 (Oryza sativa), 5'ss of exon 17
TATTCCCACACAGTTCCAACGATTTTGGCTGTGGGCCAAGCGACAAAACCATACTTACCGACCTAACAGGCCATTGTGTCCTCAAGACGAAGCGCATACTgtaagatgattttgttacacattgagttggacaaaacacaaaaggatgcc-ttggcagtttttaggccattttttaattcttggaaagctgcatgatgcac-
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TATTCCTACCCAATTTCAAAGATTTTGGCTGTGGGCCAAGCGACAAAACCATACATACCGGCCTAACCGTCCACTGACTCCTCAAGAAGAGACGCACACAgtaagatgaattaatgacatattgcgttgattaaatgatgcacagttgtagttgatgctcttgatttctagtgctcattcgtgtcta--tgcattgtgctgt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60396042|gb|DN228912.1|DN228912
EST:     ATACTTACCGACCTAACAGGCCATTGTGTCCTCAAGACGAAGCGCATACT                         GTTGGACAGCTAAAGGAATTGGTGAACAAGGCCCACAACGCTGAATTGAAA
genomic: ATACTTACCGACCTAACAGGCCATTGTGTCCTCAAGACGAAGCGCATACTgtaagatgat ... ttttatatagGTTGGACAGCTAAAGGAATTGGTGAACAAGGCCCACAACGCTGAATTGAAA