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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTGATCCCACAGGACTTCGCGCTCGTCTCGAGCATTGGACCTTTGGACTTTACCCTGCATGTATTAAGTACCTCATGTCTGCATTCGACATCCCAGAGgttcttccattttttaagctgtaatgagatcatttctgattgttgttgttgtttgccgcttacgccgtatatattctctctttcag

Basic information

species Zea mays
transcript GRMZM2G018356_T01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G018356_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os07g04210.1 (Oryza sativa), 5'ss of exon 14
TCCTGATCCCACAGGACTTCGCGCTCGTCTCGAGCATTGGACCTTTGGACTTTACCCTGCATGTATTAAGTACCTCATGTCTGCATTCGACATCCCAGAGgttcttccattttttaagctgtaatgagatc---atttctgattgttgttgttgtttgccgcttacgccgtatatattctctctttcag
|||||||||||||||||||||| ||||||| || || ||||| || || |||||||||||||| ||||||||||| ||||||||||| |||||||| |||||| |||   ||  |||  | ||     |||   |||||||| |     |    ||| |  |    |   | ||||||  || ||||||
TCCTGATCCCACAGGACTTCGCACTCGTCTGGAACAATGGACTTTAGGTCTTTACCCTGCATGCATTAAGTACCTGATGTCTGCATTTGACATCCCTGAGgttattc---ttcataaa-tataccagaatcgctatttctgagttcctgtaccattttcaaccc-tgtaatgtatatttgctatttcag

upper sequence: GRMZM2G018356_T02 (Zea mays), 5'ss of exon 10
lower sequence: Vv18s0001g11060.t01 (Vitis vinifera), 5'ss of exon 14
TCCTGATCCCACAGGACTTCGCGCTCGTCTCGAGCATTGGACCTTTGGACTTTACCCTGCATGTATTAAGTACCTCATGTCTGCATTCGACATCCCAGAGgttcttccattttttaagctgtaatgagatcatttctgattgttgttgttgtttgccgcttacgccgtatatattctctctttcag
||| ||||||||||| ||||| |||||| | || || ||||| ||||| |||||||| |||||||| |||||||||||||||||||| ||  | |||||||||       ||| |    |  | | | || ||    | |  |  |  ||| |      | |    ||  | ||||||        
TCCGGATCCCACAGGCCTTCGAGCTCGTATAGAACAATGGACATTTGGTCTTTACCCGGCATGTATCAAGTACCTCATGTCTGCATTTGATGTTCCAGAGgttagaatgctttctccattccattcatataataataggtcatcttctttgct-attagtaaacttgtggaaattctcag------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211277902|gb|FL449020.1|FL449020
EST:     TTT-CCCTGCATGTA-TAAGTACCTCATGTCTGCATTCGACATCCCAGAG                         GTTATGGCAGTAACTAGAAGTACAATCTGCAAAAAAGGAATAGAGTCCCTT
genomic: TTTACCCTGCATGTATTAAGTACCTCATGTCTGCATTCGACATCCCAGAGgttcttccat ... tctctttcagGTTATGGCAGTAACTAGAAGTACAATCTGCAAAAAAGGAATAGAGTCCCTT
EST: gi|67013703|gb|CO442452.1|CO442452
EST:     TTTACCCTGCATGTATTAAGTACCTCATGTCTGCATTCGACATCCCAGAG                         GTTATGGCAGTAACTAGAAGTACAATCTGCAAAAAAGGAATAGAGTCCCTT
genomic: TTTACCCTGCATGTATTAAGTACCTCATGTCTGCATTCGACATCCCAGAGgttcttccat ... tctctttcagGTTATGGCAGTAACTAGAAGTACAATCTGCAAAAAAGGAATAGAGTCCCTT