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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttctcttttcactattcagttttgagttgtcaacattattgttccagtattgattttggatgctcaatttgcacgtaaag

Basic information

species Zea mays
transcript GRMZM2G017086_T04
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32944644|gb|CF049463.1|CF049463
EST:     AA-AGAAACAGAAACTCCAAGCACCTCGGCAG                         ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
genomic: AACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: gi|67013124|gb|CO441873.1|CO441873
EST:     AACAGAATCTCCAAGCACCTCGGCAG                         ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
genomic: AACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: gi|50332355|gb|CO527481.1|CO527481
EST:     CTGAAACAGAAACTCCAAGCACCTCGGCAG                         ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
genomic: CTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: gi|60352250|gb|DN219223.1|DN219223
EST:     AACTGAAACAGAAACTCCAAGCACCTCGGCAG                         ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
genomic: AACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA