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TTGGATGCTCAATTTGCACGTAAAGATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAAGCTAGCGGCTTTAAAGAAAATGAGgtaatggttgtgttgtactcagggtatcattgaatcatcagtaatagctgtgaagaaataaatggatcaactgtcacattaagctttctgtttgggtcttcaatccattgtcatgcaattagggcatttcatttcag
species | Zea mays |
transcript | GRMZM2G017086_T02 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: AGTTTGGATTGAAAGCACAAGGGAAAGCTAGCGGCTTTAAAGAAAATGAG GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAGEST: gi|32866634|gb|CF006316.1|CF006316
genomic: AGTTTGGATTGAAAGCACAAGGGAAAGCTAGCGGCTTTAAAGAAAATGAGgtaatggttg ... ttcatttcagGGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG
EST: AGGGAAAGCTAGCGGCTTTAAAGAAAATGAG GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAGEST: gi|12968042|gb|BG264989.1|BG264989
genomic: AGGGAAAGCTAGCGGCTTTAAAGAAAATGAGgtaatggttg ... ttcatttcagGGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG
EST: AGTTTGGATTGAAAGCACAAGGGAAAGCTAGCGGCTTTAAAGAAAATGAG GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGGCAAAGEST: gi|31910881|gb|CD651645.1|CD651645
genomic: AGTTTGGATTGAAAGCACAAGGGAAAGCTAGCGGCTTTAAAGAAAATGAGgtaatggttg ... ttcatttcagGGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG
EST: AGTTTGGATTGAAAGCACAAGGGAAAGCTAGCGGCTTTAAAGAAAATGAG GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAGEST: gi|50332355|gb|CO527481.1|CO527481
genomic: AGTTTGGATTGAAAGCACAAGGGAAAGCTAGCGGCTTTAAAGAAAATGAGgtaatggttg ... ttcatttcagGGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG
EST: AGTTTGGATTGAAAGCACAAGGGAAAGCTAGCGGCTTTAAAGAAAATGAG GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAGEST: gi|5919412|gb|AW054509.1|AW054509
genomic: AGTTTGGATTGAAAGCACAAGGGAAAGCTAGCGGCTTTAAAGAAAATGAGgtaatggttg ... ttcatttcagGGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG
EST: AAAGCTAGCGGCTTTAAAGAAAATGAG GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGCCATTGCCAAAG
genomic: AAAGCTAGCGGCTTTAAAGAAAATGAGgtaatggttg ... ttcatttcagGGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGATGCTCAATTTGCACGTAAAGATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAAGCTAGCGGCTTTAAAGAAAATGAGgtaatggttgtgttgtactcagggtatcattgaatcatcagtaatagctgtgaagaaataaatggatcaactgtcacattaagctttctgtttgggtcttcaatccattgtcatgcaattagggcatttcatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA