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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGTTGATTACCCACTGGAATTGGATGTTTATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttctcttttcactattcagttttgagttgtcaacattattgttccagtattgattttggatgctcaatttgcacgtaaag

Basic information

species Zea mays
transcript GRMZM2G017086_T01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017086_T03 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os01g36930.1 (Oryza sativa), 5'ss of exon 13
AAAGTTGATTACCCACTGGAATTGGATGTTTATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttctcttttcactattcagttttgagttgtcaacattattgttccagtattgattttggatgctcaatttgcacgtaaag
|||||||||||||| |||||| ||||||||||||| |||||||| |||||||||||||| ||||||||||| || || |||||||   |     |   || |||| ||    ||| | | |  | |||| ||| |  ||||     |   | |||||||| || |||
AAAGTTGATTACCCGCTGGAACTGGATGTTTATGACTTTTGCTCAGATGAACTGAAACAAAAACTCCAAGCTCCCCGACAGgtagtactactact---cttttcatttccatgtt-tgagctctgttgtgccattgatgatcacc-acatttaatttgcatgtgaag

upper sequence: GRMZM2G017086_T03 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA07G01480.1 (Glycine max), 5'ss of exon 13
AAAGTTGATTACCCACTGGAATTGGATGTTTATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGgta-gctttctcttttcactattcagttttg-agttgtc---------aacattattgttcc----agtat-tgattttggatgctcaatttgcacgtaaag-------
||||| ||||| || ||||| |||||||||||||| ||||| ||||| |||||     | ||| |  |||| ||| | ||||||  || | | | || ||     | | ||   |||||          || ||  ||| |      | | | ||   ||  || |||| |||| |  |           
AAAGTAGATTATCCTCTGGAGTTGGATGTTTATGATTTTTGTTCTGACGAACTTCGTAAAAAATTGGAAGCTCCTAGACAGgtatactctttgtcttgacatgaaaatcttatggttgtttgtaagaaaaagatgtttgctttgtaaaatgtgtgggcttatattctcattttggatattgtaccttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33093217|gb|CF053211.1|CF053211
EST:     ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAG                         ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
genomic: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: gi|5932702|gb|AW057063.1|AW057063
EST:     ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAG                         ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
genomic: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: gi|32930058|gb|CF034870.1|CF034870
EST:     ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAG                         ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
genomic: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: gi|33094822|gb|CF054816.1|CF054816
EST:     ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAG                         ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
genomic: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: gi|6056638|gb|AW091043.1|AW091043
EST:     ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAATCACCTCGGCAG                         ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
genomic: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: gi|5846961|gb|AW000040.1|AW000040
EST:     ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAG                         ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
genomic: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: gi|12968043|gb|BG264990.1|BG264990
EST:     ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAG                         ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
genomic: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: gi|32942933|gb|CF047752.1|CF047752
EST:     ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAG                         ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
genomic: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: gi|67013124|gb|CO441873.1|CO441873
EST:     AACAGAATCTCCAAGCACCTCGGCAG                         ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
genomic: AACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: gi|5901176|gb|AW042276.1|AW042276
EST:     ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAG                         ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
genomic: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: gi|32933054|gb|CF037866.1|CF037866
EST:     ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAG                         ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
genomic: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: gi|5296339|gb|AI783109.1|AI783109
EST:     ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAG                         ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
genomic: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: gi|32934559|gb|CF039371.1|CF039371
EST:     ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAG                         ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
genomic: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: gi|60352250|gb|DN219223.1|DN219223
EST:     ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAG                         ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
genomic: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: gi|50332355|gb|CO527481.1|CO527481
EST:     CTGAAACAGAAACTCCAAGCACCTCGGCAG                         ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
genomic: CTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: gi|32932375|gb|CF037187.1|CF037187
EST:     ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAG                         ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
genomic: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: gi|32930666|gb|CF035478.1|CF035478
EST:     ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAG                         ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
genomic: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: gi|74240014|gb|DT647928.1|DT647928
EST:     ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAG                         ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
genomic: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: gi|33093538|gb|CF053532.1|CF053532
EST:     ATGAATTNTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAG                         ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
genomic: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA