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TGGTTGGTCCTAATGGCATTGGCAAGTCCACTATACTGAAACTAATTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAGgtgcttcattcttctgtagctacagctgcatttaccatcatgtgacatgctttgcattttctttgatttttgtcatttgagcgttattgtctgaatttca...
species | Zea mays |
transcript | GRMZM2G013890_T01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACGEST: gi|211429009|gb|FL174618.1|FL174618
genomic: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAGgtgcttcatt ... gtttttacagGTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACG
EST: AACAGTATTTCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACGEST: gi|60343993|gb|DN210966.1|DN210966
genomic: AACAGTATTTCGCTCTCCCAAGgtgcttcatt ... gtttttacagGTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACG
EST: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACGEST: gi|32930219|gb|CF035031.1|CF035031
genomic: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAGgtgcttcatt ... gtttttacagGTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACG
EST: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACGEST: gi|71307301|gb|DR789831.1|DR789831
genomic: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAGgtgcttcatt ... gtttttacagGTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACG
EST: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACGEST: gi|60341793|gb|DN208766.1|DN208766
genomic: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAGgtgcttcatt ... gtttttacagGTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACG
EST: AACTTCTGGAACAGTATTTCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACGEST: gi|12970170|gb|BG266849.1|BG266849
genomic: AACTTCTGGAACAGTATTTCGCTCTCCCAAGgtgcttcatt ... gtttttacagGTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACG
EST: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACGEST: gi|22552549|gb|BU102388.1|BU102388
genomic: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAGgtgcttcatt ... gtttttacagGTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACG
EST: AGTATTTCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACGEST: gi|60352803|gb|DN219776.1|DN219776
genomic: AGTATTTCGCTCTCCCAAGgtgcttcatt ... gtttttacagGTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACG
EST: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACGEST: gi|76914779|gb|DV165687.1|DV165687
genomic: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAGgtgcttcatt ... gtttttacagGTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACG
EST: CAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACGEST: gi|211429008|gb|FL174617.1|FL174617
genomic: CAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAGgtgcttcatt ... gtttttacagGTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACG
EST: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAGTATCATGTTGATGGGCTTGATTTGACGEST: gi|67015572|gb|CO444321.1|CO444321
genomic: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAGgtgcttcatt ... gtttttacagGTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACG
EST: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACGEST: gi|78544243|gb|DV621741.1|DV621741
genomic: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAGgtgcttcatt ... gtttttacagGTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACG
EST: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACGEST: gi|84980921|gb|DW531270.1|DW531270
genomic: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAGgtgcttcatt ... gtttttacagGTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACG
EST: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACGEST: gi|5108202|gb|AI739915.1|AI739915
genomic: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAGgtgcttcatt ... gtttttacagGTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACG
EST: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACGEST: gi|40336236|gb|CK370306.1|CK370306
genomic: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAGgtgcttcatt ... gtttttacagGTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACG
EST: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACGEST: gi|211429006|gb|FL174615.1|FL174615
genomic: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAGgtgcttcatt ... gtttttacagGTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACG
EST: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACGEST: gi|60349362|gb|DN216335.1|DN216335
genomic: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAGgtgcttcatt ... gtttttacagGTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACG
EST: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACGEST: gi|71307303|gb|DR789832.1|DR789832
genomic: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAGgtgcttcatt ... gtttttacagGTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACG
EST: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACGEST: gi|32932155|gb|CF036967.1|CF036967
genomic: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAGgtgcttcatt ... gtttttacagGTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACG
EST: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACGEST: gi|211429007|gb|FL174616.1|FL174616
genomic: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAGgtgcttcatt ... gtttttacagGTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACG
EST: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACGEST: gi|32932545|gb|CF037357.1|CF037357
genomic: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAGgtgcttcatt ... gtttttacagGTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACG
EST: TTTCTGGGGATCTGCAACCAACTTCTGGAACAGTATTTCGCTCTCCCAAG GTTCGCATGGCTGTATTTAATCAGCATCATGTTGATGGCCTTGATTTGACGEST: gi|86472924|gb|DY239294.1|DY239294
genomic: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAGgtgcttcatt ... gtttttacagGTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACG
EST: TTTCTGGGGATCTGCAACCAACTTCTGGAACAGTATTTCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACGEST: gi|37390519|gb|CF632491.1|CF632491
genomic: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAGgtgcttcatt ... gtttttacagGTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACG
EST: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACGEST: gi|211429005|gb|FL174614.1|FL174614
genomic: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAGgtgcttcatt ... gtttttacagGTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACG
EST: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACGEST: gi|20802514|gb|BQ293564.1|BQ293564
genomic: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAGgtgcttcatt ... gtttttacagGTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACG
EST: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACGEST: gi|37377213|gb|CF625190.1|CF625190
genomic: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAGgtgcttcatt ... gtttttacagGTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACG
EST: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACG
genomic: TTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAGgtgcttcatt ... gtttttacagGTTCGCATGGCTGTATTCAATCAGCATCATGTTGATGGCCTTGATTTGACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTTGGTCCTAATGGCATTGGCAAGTCCACTATACTGAAACTAATTTCTGGGGATCTGCAGCCAACTTCTGGAACAGTATTTCGCTCTCCCAAGgtgcttcattcttctgtagctacagctgcatttaccatcatgtgacatgctttgcattttctttgatttttgtcatttgagcgttattgtctgaatttca
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