1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
TCCAAGGCATGCATCGGCAGATCAAGATCAAAGTTCGATGCTCAAGGTCATTTGCAACCAGAGGGATCGTTTCCGTGCACGTCTGCGTGAAACTGAGGAGgtatatatttgatgaatttgtagaaactggcagtgtcatcttactgtttcaagtgagattggttgtctagtcctaagacaaatatacactatggcttttc...
species | Zea mays |
transcript | GRMZM2G011219_T02 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TTTGCAACCAGAGGGATCGTTTCCGTGCACGTCTGCGTGAAACTGAGGAG GAACTGAGGAGACTAAAAGAGAAGCATGAGATGCTGACTGTTGAACTGGAAEST: gi|67019074|gb|CO447823.1|CO447823
genomic: TTTGCAACCAGAGGGATCGTTTCCGTGCACGTCTGCGTGAAACTGAGGAGgtatatattt ... aggataatagGAACTGAGGAGACTAAAAGAGAAGCATGAGATGCTGACTGTTGAACTGGAA
EST: TTTGCAACCAGAGGGATCGTTTCCGTGCACGTCTGCGTGAAACTGAGGAG GAACTGAGGAGACTAAAAGAGAAGCATGAGATGCTGACTGTNGAACTGGAAEST: gi|13382114|gb|BG458789.1|BG458789
genomic: TTTGCAACCAGAGGGATCGTTTCCGTGCACGTCTGCGTGAAACTGAGGAGgtatatattt ... aggataatagGAACTGAGGAGACTAAAAGAGAAGCATGAGATGCTGACTGTTGAACTGGAA
EST: TTTGCAACCAGAGGGATCGTTTCCGTGCACGTCTGCGTGAAACTGAGGAG GAACTGAGGAGACTAAAAGAGAAGCATGAGATGCTGACTGTTGAACTGGAAEST: gi|60672578|gb|DN475280.1|DN475280
genomic: TTTGCAACCAGAGGGATCGTTTCCGTGCACGTCTGCGTGAAACTGAGGAGgtatatattt ... aggataatagGAACTGAGGAGACTAAAAGAGAAGCATGAGATGCTGACTGTTGAACTGGAA
EST: TTTGCAACCAGAGGGATCGTTTCCGTGCACGTCTGCGTGAAACTGAGGAG GAACTGAGGAGACTAAAAGAGAAGCATGAGATGCCGACTGTTGAACTGGAAEST: gi|60399347|gb|DN232161.1|DN232161
genomic: TTTGCAACCAGAGGGATCGTTTCCGTGCACGTCTGCGTGAAACTGAGGAGgtatatattt ... aggataatagGAACTGAGGAGACTAAAAGAGAAGCATGAGATGCTGACTGTTGAACTGGAA
EST: TTTGCAACCAGAGGGATCGTTTCCGTGCACGTCTGCGTGAAACTGAGGAG GAACTGAGGAGACTAAAAGAGAAGCATGAGATGCTGACTGTTGAACTGGAAEST: gi|32928329|gb|CF033141.1|CF033141
genomic: TTTGCAACCAGAGGGATCGTTTCCGTGCACGTCTGCGTGAAACTGAGGAGgtatatattt ... aggataatagGAACTGAGGAGACTAAAAGAGAAGCATGAGATGCTGACTGTTGAACTGGAA
EST: TTTGCAACCAGAGGGATCGTTTCCGTGCACGTCTGCGTGAAACTGAGGAG GAACTGAGGAGACTAAAAGAGAAGCATGAGATGCTGACTGTTGAACTGGAA
genomic: TTTGCAACCAGAGGGATCGTTTCCGTGCACGTCTGCGTGAAACTGAGGAGgtatatattt ... aggataatagGAACTGAGGAGACTAAAAGAGAAGCATGAGATGCTGACTGTTGAACTGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCAAGGCATGCATCGGCAGATCAAGATCAAAGTTCGATGCTCAAGGTCATTTGCAACCAGAGGGATCGTTTCCGTGCACGTCTGCGTGAAACTGAGGAGgtatatatttgatgaatttgtagaaactggcagtgtcatcttactgtttcaagtgagattggttgtctagtcctaagacaaatatacactatggcttttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagacaaa