1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GAAGATTGGAGTTGTTGATGCTCAATGGATTGTTCATCAAGCAGTTCCTTCACTTGGGAACCAGGGCAAGTCAGATAATGGAAGAGCACCATGGGAAGGGgtaaggtggtacttgtactatgttatttggttttttcacagtatattatatttcaaatgcatgatttttactgctacggcatcaactatgtatccatttggattttctttaattgtctacacttaattgtccaccatag
species | Zea mays |
transcript | GRMZM2G006507_T03 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CACTTGGGAACCAGGGCAAGTCAGATAATGGAAGAGCACCATGGGAAGGG GTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGCTEST: gi|74235735|gb|DT643649.1|DT643649
genomic: CACTTGGGAACCAGGGCAAGTCAGATAATGGAAGAGCACCATGGGAAGGGgtaaggtggt ... tccaccatagGTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGCT
EST: CACTTGGGAACCAGGGCAAGTCAGATAATGGAAGAGCACCATGGGAAGGG GTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGCTEST: gi|32928781|gb|CF033593.1|CF033593
genomic: CACTTGGGAACCAGGGCAAGTCAGATAATGGAAGAGCACCATGGGAAGGGgtaaggtggt ... tccaccatagGTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGCT
EST: CACTTGGGAACCAGGGCAAGTCAGATAATGGAAGAGCCCCATGGGAAGGG GTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGCTEST: gi|31348516|gb|CD432873.1|CD432873
genomic: CACTTGGGAACCAGGGCAAGTCAGATAATGGAAGAGCACCATGGGAAGGGgtaaggtggt ... tccaccatagGTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGCT
EST: CACTTGGGAACCAGGGCAAGTCAGATAATGGAAGAGCACCATGGGAAGGG GTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGCTEST: gi|24763232|gb|CA398411.1|CA398411
genomic: CACTTGGGAACCAGGGCAAGTCAGATAATGGAAGAGCACCATGGGAAGGGgtaaggtggt ... tccaccatagGTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGCT
EST: CACTTGGGAACCAGGGCAAGTCAGATAATGGAAGAGCACCATGGGAAGGG GTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGCTEST: gi|74237173|gb|DT645087.1|DT645087
genomic: CACTTGGGAACCAGGGCAAGTCAGATAATGGAAGAGCACCATGGGAAGGGgtaaggtggt ... tccaccatagGTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGCT
EST: CACTTGGGAACCAGGGCAAGTCAGATAATGGAAGAGCACCATGGGAAGGG GTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGCTEST: gi|32928833|gb|CF033645.1|CF033645
genomic: CACTTGGGAACCAGGGCAAGTCAGATAATGGAAGAGCACCATGGGAAGGGgtaaggtggt ... tccaccatagGTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGCT
EST: CACTTGGGAACCAGGGCAAGTCAGATAATGGAAGAGCACCATGGGAAGGG GTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGCTEST: gi|88751496|gb|DY535637.1|DY535637
genomic: CACTTGGGAACCAGGGCAAGTCAGATAATGGAAGAGCACCATGGGAAGGGgtaaggtggt ... tccaccatagGTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGCT
EST: CACTTGGGAACCAGGGCAAGTCAGATAATGGAAGAGCACCATGGGAAGGG GTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGGTEST: gi|116824427|gb|EC868047.1|EC868047
genomic: CACTTGGGAACCAGGGCAAGTCAGATAATGGAAGAGCACCATGGGAAGGGgtaaggtggt ... tccaccatagGTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGCT
EST: CACTTGGGAACCAGGGCAAGTCAGATAATGGAAGAGCACCATGGGAAGGG GTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAATGCTGGCTEST: gi|78544004|gb|DV621502.1|DV621502
genomic: CACTTGGGAACCAGGGCAAGTCAGATAATGGAAGAGCACCATGGGAAGGGgtaaggtggt ... tccaccatagGTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGCT
EST: CACTTGGGAACCAGGGCAAGTCAGATAATGGAAGAGCACCATGGGAAGGG GTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGCT
genomic: CACTTGGGAACCAGGGCAAGTCAGATAATGGAAGAGCACCATGGGAAGGGgtaaggtggt ... tccaccatagGTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGATTGGAGTTGTTGATGCTCAATGGATTGTTCATCAAGCAGTTCCTTCACTTGGGAACCAGGGCAAGTCAGATAATGGAAGAGCACCATGGGAAGGGgtaaggtggtacttgtactatgttatttggttttttcacagtatattatatttcaaatgcatgatttttactgctacggcatcaactatgtatccatttggattttctttaattgtctacacttaattgtccaccatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA