1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
ATTGTCGAATGCAGAAGGGTATTGAAGTGGACTTATGCCTATGGATTTTACCTGCCAGAGCATGAGCATGCCAAAAGACAGTTCTTTGAATATCTGCAAGgtttgccgtttctctctcataaataatcatgtatagactttgtttaaggatgcaagtgatgacaccaatgggtcggttgtgtggtccatttttatcatactccccttgctttgaataagatgagttttgggtcaacccagttgccctacctatgtactaaacggactattcttggtgtctttatctag
species | Zea mays |
transcript | GRMZM2G006428_T01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CCTGCCAGAGCATGAGCATGCCAAAAGACAGTTCTTTGAATATCTGCAAG GTGAGGCAGAATCAGGTTTGGAGCGGCTACATCAATGTGCAGAGAAAGAACEST: gi|22521335|gb|BU080146.1|BU080146
genomic: CCTGCCAGAGCATGAGCATGCCAAAAGACAGTTCTTTGAATATCTGCAAGgtttgccgtt ... ctttatctagGTGAGGCAGAATCAGGATTGGAGCGGCTACATCAATGTGCAGAGAAAGAAC
EST: CCTGCCAGAGCATGAGCATGCCAAAAGACAGTTCTTTGAATATCTGCAAG GTGAGGCAGAATCTGGTTTGGAGCGGCTACATCAATGTGCAGAGAAAGAACEST: gi|60396362|gb|DN229231.1|DN229231
genomic: CCTGCCAGAGCATGAGCATGCCAAAAGACAGTTCTTTGAATATCTGCAAGgtttgccgtt ... ctttatctagGTGAGGCAGAATCAGGATTGGAGCGGCTACATCAATGTGCAGAGAAAGAAC
EST: CCTGCCAGAGCATGAGCATGCCAAAAGACAGTTCTTTGAATATCTGCAAG GTGAGGCAGAATCAGGATTGGAGCGGCTACATCAATGTGCAGAGAAAGAAC
genomic: CCTGCCAGAGCATGAGCATGCCAAAAGACAGTTCTTTGAATATCTGCAAGgtttgccgtt ... ctttatctagGTGAGGCAGAATCAGGATTGGAGCGGCTACATCAATGTGCAGAGAAAGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGTCGAATGCAGAAGGGTATTGAAGTGGACTTATGCCTATGGATTTTACCTGCCAGAGCATGAGCATGCCAAAAGACAGTTCTTTGAATATCTGCAAGgtttgccgtttctctctcataaataatcatgtatagactttgtttaaggatgcaagtgatgacaccaatgggtcggttgtgtggtccatttttatcatactccccttgctttgaataagatgagttttgggtcaacccagttgccctacctatgtactaaacggactattcttggtgtctttatctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA