1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' |
TTGTGAGCGAGTACGCTGTCTGGAGAAGTGACGCGGGTAGAGGCAGTCTTCTTGCTTCGTTGGCTGAAGCTGCTTTCCTCACTGGTCTGGAGAAGAACAGgtgatctctccttttggttgcaagttggttgatctgatccttattttcgttggcgggcttggggttctactactaccaaggatagtctttactgtgagttagatgacctttttgcag
species | Zea mays |
transcript | GRMZM2G006130_T05 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CTTGCTTCGTTGGCTGAAGCTGCTTTCCTCACTGGTCTGGAGAAGAACAG TGATATCGTTCAGATGGCAAGTTACGCTCCACTCTTCGTGAACGACAATGAEST: gi|211098336|gb|FL317177.1|FL317177
genomic: CTTGCTTCGTTGGCTGAAGCTGCTTTCCTCACTGGTCTGGAGAAGAACAGgtgatctctc ... ctttttgcagTGATATCGTTCAGATGGCAAGTTACGCTCCACTCTTCGTGAACGACAATGA
EST: CTTGCTTCGTTGGCTGAAGCTGCTTTCCTCACTGGTCTGGAGAAGAACAG TGATATCGTTCAGATGGCAAGTTACGCTCCACTCTTCGTGAACGACAATGAEST: gi|87151803|gb|DY396592.1|DY396592
genomic: CTTGCTTCGTTGGCTGAAGCTGCTTTCCTCACTGGTCTGGAGAAGAACAGgtgatctctc ... ctttttgcagTGATATCGTTCAGATGGCAAGTTACGCTCCACTCTTCGTGAACGACAATGA
EST: CTTGCTTCGTTGGCTGAAGCTGCTTTCCTCACTGGTCTGGAGAAGAACAG TGATATCGTTCAGATGGCAAGTTACGCTCCACTCTTCGTGAACGACAATGAEST: gi|211146564|gb|FL325013.1|FL325013
genomic: CTTGCTTCGTTGGCTGAAGCTGCTTTCCTCACTGGTCTGGAGAAGAACAGgtgatctctc ... ctttttgcagTGATATCGTTCAGATGGCAAGTTACGCTCCACTCTTCGTGAACGACAATGA
EST: TTCGTTGGCTGAAGCTGCTTTCCTCACTGGTCTGGAGAAGAACAG TGATATCGTTCAGATGGCAAGTTACGCTCCACTCTTCGTGAACGACAATGAEST: gi|20300152|gb|BQ163095.1|BQ163095
genomic: TTCGTTGGCTGAAGCTGCTTTCCTCACTGGTCTGGAGAAGAACAGgtgatctctc ... ctttttgcagTGATATCGTTCAGATGGCAAGTTACGCTCCACTCTTCGTGAACGACAATGA
EST: CTTGCTTCGTTGGCTGAAGCTGCTTTCCTCACTGGTCTGGAGAAGAACAG TGATATCGTTCAGATGGCAAGTTACGCTCCACTCTTCGTGAACGACAATGAEST: gi|211378660|gb|FL357038.1|FL357038
genomic: CTTGCTTCGTTGGCTGAAGCTGCTTTCCTCACTGGTCTGGAGAAGAACAGgtgatctctc ... ctttttgcagTGATATCGTTCAGATGGCAAGTTACGCTCCACTCTTCGTGAACGACAATGA
EST: CTTGCTTCGTTGGCTGAAGCTGCTTTCCTCACTGGTCTGGAGAAGAACAG TGATATCGTTCAGATGGCAAGTTACGCTCCACTCTTCGTGAACGACAATGAEST: gi|211258110|gb|FL346334.1|FL346334
genomic: CTTGCTTCGTTGGCTGAAGCTGCTTTCCTCACTGGTCTGGAGAAGAACAGgtgatctctc ... ctttttgcagTGATATCGTTCAGATGGCAAGTTACGCTCCACTCTTCGTGAACGACAATGA
EST: CTTGCTTCGTTGGCTGAAGCTGCTTTCCTCACTGGTCTGGAGAAGAACAG TGATATCGTTCAGATGGCAAGTTACGCTCCACTCTTCGTGAACGACAATGAEST: gi|18654846|gb|BM499651.1|BM499651
genomic: CTTGCTTCGTTGGCTGAAGCTGCTTTCCTCACTGGTCTGGAGAAGAACAGgtgatctctc ... ctttttgcagTGATATCGTTCAGATGGCAAGTTACGCTCCACTCTTCGTGAACGACAATGA
EST: CTTGCTTCGTTGGCTGAAGCTGCTTTCCTCACTGGTCTGGAGAAGAACAG TGATATCGTTCAGATGGCAAGTTACGCTCCACTCTTCGTGAACGACAATGAEST: gi|211474807|gb|FL320108.1|FL320108
genomic: CTTGCTTCGTTGGCTGAAGCTGCTTTCCTCACTGGTCTGGAGAAGAACAGgtgatctctc ... ctttttgcagTGATATCGTTCAGATGGCAAGTTACGCTCCACTCTTCGTGAACGACAATGA
EST: CTTGCTTCGTTGGCTGAAGCTGCTTTCCTCACTGGTCTGGAGAAGAACAG TGATATCGTTCAGATGGCAAGTTACGCTCCACTCTTCGTGAACGACAATGA
genomic: CTTGCTTCGTTGGCTGAAGCTGCTTTCCTCACTGGTCTGGAGAAGAACAGgtgatctctc ... ctttttgcagTGATATCGTTCAGATGGCAAGTTACGCTCCACTCTTCGTGAACGACAATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTGAGCGAGTACGCTGTCTGGAGAAGTGACGCGGGTAGAGGCAGTCTTCTTGCTTCGTTGGCTGAAGCTGCTTTCCTCACTGGTCTGGAGAAGAACAGgtgatctctccttttggttgcaagttggttgatctgatccttattttcgttggcgggcttggggttctactactaccaaggatagtctttactgtgagttagatgacctttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC