1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTGGGTTGGAGCTACTTCTGAGTTCCTTTCTGCTCTTCATGACAGCTCCTACATGCATAGGCAGAAGgtgtgcaggacactaattcatcaatgaaatttgccttcttgaatgctgatcttttctgtatgttcactaaaatatttcatctcatgattaaatacag
species | Zea mays |
transcript | GRMZM2G005444_T01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CTGAGTTCCTTTCTGCTCTTCATGACAGCTCCTACATGCATAGGCAGAAG GCAAATGATCATGTTTTGCTCTCGTCTTTGGAATCCTCCATTGATAAGAGTEST: gi|76011577|gb|DT938747.1|DT938747
genomic: CTGAGTTCCTTTCTGCTCTTCATGACAGCTCCTACATGCATAGGCAGAAGgtgtgcagga ... ttaaatacagGCAAATGATCATGTTTTGCTCTCGTCTTTGGAATCCTCCATTGATAAGAGT
EST: CTGAGTTCCTTTCTGCTCTTCATGACAGCTCCTACATGCATAGGCAGAAG GCAAATGATCATGTTTTGCTCTCGTCTTTGGAATCCTCCATTGATAAGAGTEST: gi|76017556|gb|DT944726.1|DT944726
genomic: CTGAGTTCCTTTCTGCTCTTCATGACAGCTCCTACATGCATAGGCAGAAGgtgtgcagga ... ttaaatacagGCAAATGATCATGTTTTGCTCTCGTCTTTGGAATCCTCCATTGATAAGAGT
EST: CTGAGTTCCTTTCTGCTCTTCATGACAGCTCCTACATGCATAGGCAGAAG GCAAATGATCATGTTTTEST: gi|32922020|gb|CF026832.1|CF026832
genomic: CTGAGTTCCTTTCTGCTCTTCATGACAGCTCCTACATGCATAGGCAGAAGgtgtgcagga ... ttaaatacagGCAAATGATCATGTTTT
EST: CTGAGTTCCTTTCTGCTCTTCATGACAGCTCCTACATGCATAGGCAGAAG GCAAATGATCATGTTT
genomic: CTGAGTTCCTTTCTGCTCTTCATGACAGCTCCTACATGCATAGGCAGAAGgtgtgcagga ... ttaaatacagGCAAATGATCATGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGGTTGGAGCTACTTCTGAGTTCCTTTCTGCTCTTCATGACAGCTCCTACATGCATAGGCAGAAGgtgtgcaggacactaattcatcaatgaaatttgccttcttgaatgctgatcttttctgtatgttcactaaaatatttcatctcatgattaaatacag
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