1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GAAGAGATATTTGAAGGAAAAGGTGATGTTAAGGAAGAGGGGGAACTTACACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAGgtaatttttatcttggcccttgaacgtaaacgaggatgcctttccgctgtcaatctcatgcaccctggcttttagcaaggatgtccaaaattagatgaatgctctttacttagctgtgttcaagatggacaatcaatgattttgatctttttccctaatgcag
species | Zea mays |
transcript | GRMZM2G005308_T01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAG CATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTCEST: gi|211459691|gb|FL207478.1|FL207478
genomic: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAGgtaattttta ... cctaatgcagCATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTC
EST: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAG CATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTCEST: gi|24769907|gb|CA405036.1|CA405036
genomic: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAGgtaattttta ... cctaatgcagCATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTC
EST: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAG CATCCCATAAGGAGAGGCCAGCGCCAGCCAAGTTGCAGAAAGATTAAACTCEST: gi|211183290|gb|FL434310.1|FL434310
genomic: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAGgtaattttta ... cctaatgcagCATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTC
EST: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAG CATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTCEST: gi|60394413|gb|DN227283.1|DN227283
genomic: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAGgtaattttta ... cctaatgcagCATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTC
EST: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAG CATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTCEST: gi|71764578|gb|DR962515.1|DR962515
genomic: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAGgtaattttta ... cctaatgcagCATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTC
EST: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAG CATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTCEST: gi|71761969|gb|DR959906.1|DR959906
genomic: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAGgtaattttta ... cctaatgcagCATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTC
EST: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAG CATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTCEST: gi|211183291|gb|FL434311.1|FL434311
genomic: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAGgtaattttta ... cctaatgcagCATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTC
EST: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAG CATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTCEST: gi|31364214|gb|CD448569.1|CD448569
genomic: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAGgtaattttta ... cctaatgcagCATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTC
EST: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAG CATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTCEST: gi|76011806|gb|DT938976.1|DT938976
genomic: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAGgtaattttta ... cctaatgcagCATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTC
EST: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAG CATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTCEST: gi|60353438|gb|DN220411.1|DN220411
genomic: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAGgtaattttta ... cctaatgcagCATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTC
EST: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAG CATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTCEST: gi|40303495|gb|CK347882.1|CK347882
genomic: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAGgtaattttta ... cctaatgcagCATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTC
EST: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAG CATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTCEST: gi|37392792|gb|CF633649.1|CF633649
genomic: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAGgtaattttta ... cctaatgcagCATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTC
EST: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAG CATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTC
genomic: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAGgtaattttta ... cctaatgcagCATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGAGATATTTGAAGGAAAAGGTGATGTTAAGGAAGAGGGGGAACTTACACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAGgtaatttttatcttggcccttgaacgtaaacgaggatgcctttccgctgtcaatctcatgcaccctggcttttagcaaggatgtccaaaattagatgaatgctctttacttagctgtgttcaagatggacaatcaatgattttgatctttttccctaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT