Sequence
atgc intronic sequence ATGC exonic sequenceTTTGAACCAGAATCTTCTAGTGCCATGGGGTTTGGCTTCAGATGTGGGTTCCTTGGTCTTCTCCATATGGAAATAGTTCAGgttcttacaatctacttggttcatggcagtagctcataataaaaccactatggcttgacatttctacaacatagcttttttctattttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G003157_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g06300.1 (Oryza sativa), 5'ss of exon 13
TTTGAACCAGAATCTTCTAGTGCCATGGGGTTTGGCTTCAGATGTGGGTTCCTTGGTCTTCTCCATATGGAAATAGTTCAGgttcttacaatctacttggttcatggcagt--agctcataataaaaccactatggcttgacatttctacaacatagcttttttctattttcag
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TTTGAACCAGAATCTTCAAGTGCCATGGGTTTTGGCTTCAGATGTGGATTTCTCGGTCTTCTTCATATGGAGATTGTGCAGgttcttataatctacttcactctcactagtccatctcatattacagctatggtgacttgaaatttcgacaacataa-tgttctctttgttcag
upper sequence: GRMZM2G003157_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA04G38360.1 (Glycine max), 5'ss of exon 13
TTTGAACCAGAATCTTCTAGTGCCATGGGGTTTGGCTTCAGATGTGGGTTCCTTGGTCTTCTCCATATGGAAATAGTTCAGgttcttaca---------atctact---tgg--ttcatggcagtagctcataataaaaccac-tatggc----ttgacatttctac-aacat----agcttttttctatttt-cag----------------
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TTTGAACCTGAGACATCGAGTGCCATGGGATTTGGCTTTAGATGTGGGTTTCTGGGCCTTCTTCATATGGAAATTGTTCAGgttcgaatatgttggagcatctactctttggctttcataggaattgcttg-aatgttcttatatatggcataattgacattctgattaactttggaaacctggtcttatcttacaagttctttacattacag
upper sequence: GRMZM2G003157_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA04G33480.1 (Glycine max), 5'ss of exon 7
TTTGAACCAGAATCTTCTAGTGCCATGGGGTTTGGCTTCAGATGTGGGTTCCTTGGTCTTCTCCATATGGAAATAGTTCAGgttcttaca---------atctact---tgg--ttcatggcagtagctcataataaaaccac-tatggc----ttgacatttctac-aacat----agcttttttctatttt--cag---------------
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TTTGAACCTGAGACATCGAGTGCCATGGGATTTGGCTTTATATGTGGGTTTCTGGGCCTTCTTCATATGGAAATTGTTCAGgttcgaatatgttggagcatctactctttggctttcataggaattgcttg-aatgttcttatatatggcataattgacattctgattaactttggaaacctggtcttatcttaccagttctttacattacag
upper sequence: GRMZM2G003157_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA06G16700.1 (Glycine max), 5'ss of exon 13
TTTGAACCAGAATCTTCTAGTGCCATGGGGTTTGGCTTCAGATGTGGGTTCCTTGGTCTTCTCCATATGGAAATAGTTCAGgttcttacaatctacttggttcatggcagtagctcataataaaaccactatggcttgacatttctacaacatagct-----tttttctattttcag-------------------------------------
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TTTGAACCTGAGACATCAAGTGCCATGGGATTTGGCTTTAGATGTGGGTTTCTGGGCCTTCTTCATATGGAAATTGTTCAGgttcgaatttgttggagcatctactctttgactttaataggaaatgcttgaatgttcttatatatatagcataattgacattctgattaactttggaaacctggtcttatcttacaagttctttacattatag
upper sequence: GRMZM2G003157_T02 (Zea mays), 5'ss of exon 4
lower sequence: AT5G08650.1 (Arabidopsis thaliana), 5'ss of exon 13
TTTGAACCAGAATCTTCTAGTGCCATGGGGTTTGGCTTCAGATGTGGGTTCCTTGGTCTTCTCCATATGGAAATAGTTCAGgttcttacaatctacttggttcatggcagtagctcataataaaaccactatggcttgacatttc---tacaaca-----tagcttttttctattttcag--
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TTTGAGCCTGAAACTTCGAGTGCCATGGGATTTGGCTTTAGATGCGGGTTTTTGGGTCTTCTCCACATGGAAATTGTGCAGgt-cagatatgtttcgctcttcttgttctaaagtgtttttggtgcgtctctgactgaaaatttcctatgcaacagaagatagagaaaagaaattcatagat
upper sequence: GRMZM2G003157_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv07s0031g03050.t01 (Vitis vinifera), 5'ss of exon 13
TTTGAACCAGAATCTTCTAGTGCCATGGGGTTTGGCTTCAGATGTGGGTTCCTTGGTCTTCTCCATATGGAAATAGTTCAGgttcttacaatct-acttggttcatggcagtagctcataataaaaccactatggcttgacatttctacaaca-tagcttttttctattttcag--------------------------------
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TTTGAGCCTGAGACATCCAGTGCCATGGGCTTTGGCTTTAGGTGTGGGTTCTTGGGTCTTCTCCATATGGAAATCATTCAGgtccacatgctttcaactgcatctctgctgctcctt-tagtaattttatt-tgatcagtaattaatagattgctgacaaatttcaggaatcacaacacgttctctgataagtttacatcttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|93282528|gb|EB674792.1|EB674792EST: TTGGCTTCAGATGTGGGTTCCTTGGTCTTCTCCATATGGAAATAGTTCAG GAAAGGCTTGAGAGGGAATACAACTTGAACTTAATAATTACTGCACCAAGC
genomic: TTGGCTTCAGATGTGGGTTCCTTGGTCTTCTCCATATGGAAATAGTTCAGgttcttacaa ... ctattttcagGAAAGGCTTGAGAGGGAATACAACTTGAACTTAATAATTACTGCACCAAGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTGAACCAGAATCTTCTAGTGCCATGGGGTTTGGCTTCAGATGTGGGTTCCTTGGTCTTCTCCATATGGAAATAGTTCAGgttcttacaatctacttggttcatggcagtagctcataataaaaccactatggcttgacatttctacaacatagcttttttctattttcag
- - - - - - - - - - - - - - - - - - - CAGATG