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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCATCTGGAGGAGAGTCAAATGAGCAGgtataggcaaactattcttgaacaatgaaaacatcgaagcagtcattctgaatacatgtgattttctatgtatcaatctgcctttttttctgttggaatg...

Basic information

species Zea mays
transcript GRMZM2G000749_T01
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87155407|gb|DY400196.1|DY400196
EST:     TAAAAGCTCTAAAAGGAAACTTGGCATCTGGAGGAGAGTCAAATGAGCAG                         GCTGGGATCAACGTGGAGAACTTTAGATCTTCTGTATTTCCTTCCCGGCAG
genomic: TAAAAGCTCTAAAAGGAAACTTGGCATCTGGAGGAGAGTCAAATGAGCAGgtataggcaa ... tcaattccagGCTGGGATCAACGTGGAGAACTTTAGATCTTCTGTATTTCCTTCCCGGCAG
EST: gi|211264027|gb|FL283565.1|FL283565
EST:     TAAAAGCTCTAAAAGGAAACTTGGCATCTGGAGGAGAGTCAAATGAGCAG                         GCTGGGATCAACGTGGAGAACTTTAGATCTTCTGTATTTCCTTCCCGGCAG
genomic: TAAAAGCTCTAAAAGGAAACTTGGCATCTGGAGGAGAGTCAAATGAGCAGgtataggcaa ... tcaattccagGCTGGGATCAACGTGGAGAACTTTAGATCTTCTGTATTTCCTTCCCGGCAG
EST: gi|78027367|gb|DV495754.1|DV495754
EST:     TAAAAGCTCTAAAAGGAAACTTGGCATCTGGAGGAGAGTCAAATGAGCAG                         GCTGGGATCAACGTGGAGAACTTTAGATCTTCTGTATTTCCTTCCCGGCAG
genomic: TAAAAGCTCTAAAAGGAAACTTGGCATCTGGAGGAGAGTCAAATGAGCAGgtataggcaa ... tcaattccagGCTGGGATCAACGTGGAGAACTTTAGATCTTCTGTATTTCCTTCCCGGCAG
EST: gi|88756696|gb|DY540837.1|DY540837
EST:     TAAAAGCTCTAAAAGGAAACTTGGCATCTGGAGGAGAGTCAAATGAGCAG                         GCTGGGATCAACGTGGAGAACTTTAGATCTTCTGTATTTCCTTCCCGGCAG
genomic: TAAAAGCTCTAAAAGGAAACTTGGCATCTGGAGGAGAGTCAAATGAGCAGgtataggcaa ... tcaattccagGCTGGGATCAACGTGGAGAACTTTAGATCTTCTGTATTTCCTTCCCGGCAG
EST: gi|76926950|gb|DV171069.1|DV171069
EST:     TAAAAGCTCTAAAAGGAAACTTGGCATCTGGAGGAGAGTCAAATGAGCAG                         GCTGGGATCAACGTGGAGAACTTTAGATCTTCTGTATTTCCTTCCCGGCAG
genomic: TAAAAGCTCTAAAAGGAAACTTGGCATCTGGAGGAGAGTCAAATGAGCAGgtataggcaa ... tcaattccagGCTGGGATCAACGTGGAGAACTTTAGATCTTCTGTATTTCCTTCCCGGCAG
EST: gi|71304827|gb|DR788527.1|DR788527
EST:     TAAAAGCTCTAAAAGGAAACTTGGCATCTGGAGGAGAGTCAAATGAGCAG                         GCTGGGATCAACGTGGAGAACTTTAGATCTTCTGTATTTCCTTCCCGGCAG
genomic: TAAAAGCTCTAAAAGGAAACTTGGCATCTGGAGGAGAGTCAAATGAGCAGgtataggcaa ... tcaattccagGCTGGGATCAACGTGGAGAACTTTAGATCTTCTGTATTTCCTTCCCGGCAG
EST: gi|71320214|gb|DR796863.1|DR796863
EST:     AAAAGGAAACTTGGCATCTGCAGGAGAGTCAAATGAGCAG                         GCTGGGATCAACGTGGAGAACTTTAGATCTTCTGTATTTCCTTCCCGGCAG
genomic: AAAAGGAAACTTGGCATCTGGAGGAGAGTCAAATGAGCAGgtataggcaa ... tcaattccagGCTGGGATCAACGTGGAGAACTTTAGATCTTCTGTATTTCCTTCCCGGCAG
EST: gi|67021105|gb|CO449854.1|CO449854
EST:     CTCTAAAAGGAAACTTGGCATCTGGCA-GAGAGTCAAATGAGCAG                         GCTGGGATCAACGTGGAGAACTTTAGATCTTCTGTATTTCCTTCCCGGCAG
genomic: CTCTAAAAGGAAACTTGGCATCTGG-AGGAGAGTCAAATGAGCAGgtataggcaa ... tcaattccagGCTGGGATCAACGTGGAGAACTTTAGATCTTCTGTATTTCCTTCCCGGCAG
EST: gi|211534613|gb|FL443294.1|FL443294
EST:     TAAAAGCTCTAAAAGGAAACTTGGCATCTGGAGGAGAGTCAAATGAGCAG                         GCTGGGATCAACGTGGAGAACTTTAGATCTTCTGTATTTCCTTCCCGGCAG
genomic: TAAAAGCTCTAAAAGGAAACTTGGCATCTGGAGGAGAGTCAAATGAGCAGgtataggcaa ... tcaattccagGCTGGGATCAACGTGGAGAACTTTAGATCTTCTGTATTTCCTTCCCGGCAG
EST: gi|211264028|gb|FL283566.1|FL283566
EST:     AAAAGCTCTAAAAGGAAACTTGGCATGCTGGAGGAGAGTCAAATGAGCAG                         GCTGGGATCAACGTGGAGAACTTTAGATCTTCTGTATTTCCTTCCCGGCAG
genomic: AAAAGCTCTAAAAGGAAACTTGGCAT-CTGGAGGAGAGTCAAATGAGCAGgtataggcaa ... tcaattccagGCTGGGATCAACGTGGAGAACTTTAGATCTTCTGTATTTCCTTCCCGGCAG
EST: gi|78544033|gb|DV621531.1|DV621531
EST:     TAAAAGCTCTAAAAGGAAACTTGGCATCTGGAGGAGAGTCAAATGAGCAG                         GCTGGGATCAACGTGGAGAACTTTAGATCTTCTGTATTTCCTTCCCGGCAG
genomic: TAAAAGCTCTAAAAGGAAACTTGGCATCTGGAGGAGAGTCAAATGAGCAGgtataggcaa ... tcaattccagGCTGGGATCAACGTGGAGAACTTTAGATCTTCTGTATTTCCTTCCCGGCAG
EST: gi|60336702|gb|DN203675.1|DN203675
EST:     TAAAAGCTCTAAAAGGAAACTTGGCATCTGGAGGAGAGTCAAATGAGCAG                         GCTGGGATCAACGTGGAGAACTTTAGATCTTCTGTATTTCCTTCCCGGCAG
genomic: TAAAAGCTCTAAAAGGAAACTTGGCATCTGGAGGAGAGTCAAATGAGCAGgtataggcaa ... tcaattccagGCTGGGATCAACGTGGAGAACTTTAGATCTTCTGTATTTCCTTCCCGGCAG
EST: gi|211138345|gb|FL473246.1|FL473246
EST:     AAAAGCTCTAAAAGGAAACTTGGCATCT-GAGGGAGAGTCAAATGAGCAG                         GCTGGGATCAACGTGGAGAACTTTAGATCTTCTGTATTTCCTTCCCGGCAG
genomic: AAAAGCTCTAAAAGGAAACTTGGCATCTGGA-GGAGAGTCAAATGAGCAGgtataggcaa ... tcaattccagGCTGGGATCAACGTGGAGAACTTTAGATCTTCTGTATTTCCTTCCCGGCAG
EST: gi|71304825|gb|DR788526.1|DR788526
EST:     TAAAAGCTCTAAAAGGAAACTTGGCATCTGGAGGAGAGTCAAATGAGCAG                         GCTGGGATCAACGTGGAGAACTTTAGATCTTCTGTATTTCCTTCCCGGCAG
genomic: TAAAAGCTCTAAAAGGAAACTTGGCATCTGGAGGAGAGTCAAATGAGCAGgtataggcaa ... tcaattccagGCTGGGATCAACGTGGAGAACTTTAGATCTTCTGTATTTCCTTCCCGGCAG
EST: gi|71757532|gb|DR955469.1|DR955469
EST:     TAAAAGCTCTAAAAGGAAACTTGGCATCTGGAGGAGAGTCAAATGAGCAG                         GCTGGGATCAACGTGGAGAACTTTAGATCTTCTGTATTTCCTTCCCGGCAG
genomic: TAAAAGCTCTAAAAGGAAACTTGGCATCTGGAGGAGAGTCAAATGAGCAGgtataggcaa ... tcaattccagGCTGGGATCAACGTGGAGAACTTTAGATCTTCTGTATTTCCTTCCCGGCAG
EST: gi|67040818|gb|CO467073.1|CO467073
EST:     TAAAAGCTCTAAAAGGAAACTTGGCATCTGGAGGAGAGTCAAATGAGCAG                         GCTGGGATCAACGTGGAGAACTTTAGATCTTCTGTATTTCCTTCCCGGCAG
genomic: TAAAAGCTCTAAAAGGAAACTTGGCATCTGGAGGAGAGTCAAATGAGCAGgtataggcaa ... tcaattccagGCTGGGATCAACGTGGAGAACTTTAGATCTTCTGTATTTCCTTCCCGGCAG
EST: gi|211264029|gb|FL283567.1|FL283567
EST:     TAAAAGCTCTAAAAGGAAACTTGGCATCTGGAGGAGAGTCAAATGAGCAG                         GCTGGGATCAACGTGGAGAACTTTAGATCTTCTGTATTTCCTTCCCGGCAG
genomic: TAAAAGCTCTAAAAGGAAACTTGGCATCTGGAGGAGAGTCAAATGAGCAGgtataggcaa ... tcaattccagGCTGGGATCAACGTGGAGAACTTTAGATCTTCTGTATTTCCTTCCCGGCAG
EST: gi|76926948|gb|DV171068.1|DV171068
EST:     TAAAAGCTATAAAAGGAAACTTGGCATTTGGAGGAGAGTCAAATGAGCAG                         GCTGGGATCAACGTGGAGAACTTTAGATCTTTTGTTTTTCCTTCCCGGCAG
genomic: TAAAAGCTCTAAAAGGAAACTTGGCATCTGGAGGAGAGTCAAATGAGCAGgtataggcaa ... tcaattccagGCTGGGATCAACGTGGAGAACTTTAGATCTTCTGTATTTCCTTCCCGGCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCATCTGGAGGAGAGTCAAATGAGCAGgtataggcaaactattcttgaacaatgaaaacatcgaagcagtcattctgaatacatgtgattttctatgtatcaatctgcctttttttctgttggaatg

- - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG