Sequence
atgc intronic sequence ATGC exonic sequenceTTATGGTGGGGTATTGTTGGCAATGTGTTCTAGTGACTTCATCTGCTTTTATGACTGGGCTGATTGTAGACTAATACGCCGAATCGATGTGAATGTTAAGgtgagtcaaaagtattatttttccttgggtggaaattttgtatgtatgagtttaatattaaccttttgtttatcatgtgtttatag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os06g05180.2 (Oryza sativa), 5'ss of exon 13
TTATGGTGGGGTATTGTTGGCAATGTGTTCTAGTGACTTCATCTGCTTTTATGACTGGGCTGATTGTAGACTAATACGCCGAATCGATGTGAATGTTAAGgtgagtcaaaagtattatttttccttgggtggaaatt--ttgtatgtatgagtttaatattaacct---tttgtttatca-tgtgtttatag
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TTTTGGTGGAATATTATTGGCGATGTGTTCCAGTGATTTCATTTGCTTTTATGACTGGGCTGACTGTAGACTAATACGCCGCATTGATGTGAATGTCAAAgtgagtcaaa--tattatctattgatatttatagattgatacttttaacgaatttcatactgaaataactagttttgtcactgtatttttag
upper sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 2
TTATGGTGGGGTATTGTTGGCAATGTGTTCTAGTGACTTCATCTGCTTTTATGACTGGGCTGATTGTAGACTAATACGCCGAATCGATGTGAATGTTAAGgtgagt-----ca-aaagtattatttttccttgggtggaaattttgtatgtatgagtttaatattaaccttttgtttatcatgtgtttatag
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ATTTGGTGGCACTGTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTATGATTGGGCTGAATGCAGGTTGATTCGTCGTATTGATGTTAATGTTAAAgtaagtgcttgcatgaggtgacatcagctttctgcttttatttcttcttactgtttcttgttaattttgttaaaattttcttgtgtcag---
upper sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 13
TTATGGTGGGGTATTGTTGGCAATGTGTTCTAGTGACTTCATCTGCTTTTATGACTGGGCTGATTGTAGACTAATACGCCGAATCGATGTGAATGTTAAGgtgagt----caaaagtattatttttccttgggtggaaattttgtatgtatga---gtttaatattaaccttttgtttatcatgtgtttatag
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ATTTGGTGGCACTCTACTGGCGATGTGCTCCAACGATTTCATCTGCTTTTATGACTGGGCTGAATGCAGGTTGATCTATCGCATTGATGTCAATGTGAAAgtaagtactttgattaggtgacatttagttatctgctcttttccttcttattcattgtttaatataattttgttattaatcttgtgtcag---
upper sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 13
TTATGGTGGGGTATTGTTGGCAATGTGTTCTAGTGACTTCATCTGCTTTTATGACTGGGCTGATTGTAGACTAATACGCCGAATCGATGTGAATGTTAAGgtgagt----caaaagtattatttttccttgggtggaaattttgtatgtatgagtt---taatattaaccttttgtttatcatgtgtttatag
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ATTCGGTGGCACTTTACTGGCGATGTGCTCCAACGATTTCATCTGCTTTTATGACTGGGCTGAATGCAGGTTGATCTATCGCATTGATGTCAATGTGAAAgtaagtactttgattaggtgacatctagttatctgctcttttccttcttattcgttgtttaatttaattttgttatttatcttgtgtcag---
upper sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 13
lower sequence: AT1G52360.2 (Arabidopsis thaliana), 5'ss of exon 13
TTATGGTGGGGTATTGTTGGCAATGTGTTCTAGTGACTTCATCTGCTTTTATGACTGGGCTGATTGTAGACTAATACGCCGAATCGATGTGAATGTTAAGgtg------------------agtcaaaagtattatttttccttgggtggaaattttgtatgtatgagtttaatattaaccttttgtttatcatgtgtttatag---------------------------------------------
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CTTTGGAGGAACCTTGTTAGCTATGTGTTCAAGTGATTTCATCTGCTTTTATGATTGGGCTGAATGTAGGCTGATTCAACGTATTGACGTCACTGTAAAGgtatcccagttaacttggctcagtttattgtaagaagtttacttcaagacatatttggaatagtggaaactaatatcattgccttcagtttgaggttttcctcgtttgtttcttctctaatttgtagtgttgctacataacgtttgcag
upper sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 13
lower sequence: PP1S243_63V6.1 (Physcomitrella patens), 5'ss of exon 13
TTATGGTGGGGTATTGTTGGCAATGTGTTCTAGTGACTTCATCTGCTTTTATGACTGGGCTGATTGTAGACTAATACGCCGAATCGATGTGAATGTTAAGgt--gagtcaaaagtat------tatttttccttgggtggaaattttgtatgt---atgagtttaatattaaccttttgtttatca-tgtgtt---tatag--------------------------------------------
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GTACGGTGGTGCCTTGCTTGGAATCCGTTCTAATGACTTGGTCTGCTTTTATGACTGGGCTGAATGTCGTGTGGTTCGAAGGATTGATGTCGTAGTCAAGgtaagagtcgcaggtttctcctctttctcttctttttctgatattttgtctttctaatgaggaaagaatgaaatgcttgtttttgactgtgttgcgtatattttaaattcagcttaagctaattttttctgtgttttgaggacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31353243|gb|CD437600.1|CD437600EST: ATGACTGGGCTGATTGTAGACTAATACGCCGAATCGATGTGAATGTTAAG AATGTTTACTGGGCTGATAGTGGTGACCTAGTTGCAATAGCAAGTGATACA
genomic: ATGACTGGGCTGATTGTAGACTAATACGCCGAATCGATGTGAATGTTAAGgtgagtcaaa ... gtgtttatagAATGTTTACTGGGCTGATAGTGGTGACCTAGTTGCAATAGCAAGTGATACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTATGGTGGGGTATTGTTGGCAATGTGTTCTAGTGACTTCATCTGCTTTTATGACTGGGCTGATTGTAGACTAATACGCCGAATCGATGTGAATGTTAAGgtgagtcaaaagtattatttttccttgggtggaaattttgtatgtatgagtttaatattaaccttttgtttatcatgtgtttatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT