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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAgtaagtgtcacctgtattaaactgccattctttgtggattttagaagttaaacaatcactttcagaaagtacatattgtctcttttttgttatttgctatgcagcagcaacgtgtaattgcattataacagtattatctgtactaacagcatatgtgtttgcag

Basic information

species Zea mays
transcript GRMZM5G866758_T02
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G866758_T02 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os09g07830.2 (Oryza sativa), 5'ss of exon 12
GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAgtaagtgtcacctgtattaaactgccattctttgtggattttagaagttaaacaatcactttcagaaagtacatattgtctcttttttgttatttgctatgcagcagcaacgtgtaat----tgcattataacagtatta--tctgta-----ctaacagcatatgtgtttgcag
|||||||| |||||||||||||| |||||||||||||||||||||||     |||   || ||||   ||| ||| ||||  | |    ||    |||   | |  |||| | ||| ||   |    ||   ||||||  || |    ||||  | || |      || |||    ||||||  ||  ||     ||    | || ||    || ||
GCTGTTGCACTTGCAAATCAAAAGCTTCTTGGAATTCCTTCAgtaagc--tgccttagttcaactataattatttctggaactaattgttttttaaattgttcttggaaattgcat-ttaagttcccttcactatttgaaattcgctggcaatctttagtgtggcccaatatttatgtattagttccttaatactctgctggtatttgctcctgtag

upper sequence: GRMZM5G866758_T02 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os09g07830.3 (Oryza sativa), 5'ss of exon 11
----------------------------------------------------------GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAgtaagtgtcacctgtattaaactgccattctttgtggattttagaagttaaacaatcactttcagaaagtacatattgtctcttttttgttatttgctatgcagcagcaacgtgtaat----tgcattataacagtatta--tctgta-----ctaacagcatatgtgtttgcag
                                                          |||||||| |||||||||||||| |||||||||||||||||||||||     |||   || ||||   ||| ||| ||||  | |    ||    |||   | |  |||| | ||| ||   |    ||   ||||||  || |    ||||  | || |      || |||    ||||||  ||  ||     ||    | || ||    || ||
GTAATCATAATTTGTTCCAAAAATTCTAATGGTATTTATTTTTGACTTATCAATACAGGCTGTTGCACTTGCAAATCAAAAGCTTCTTGGAATTCCTTCAgtaagc--tgccttagttcaactataattatttctggaactaattgttttttaaattgttcttggaaattgcat-ttaagttcccttcactatttgaaattcgctggcaatctttagtgtggcccaatatttatgtattagttccttaatactctgctggtatttgctcctgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17931054|gb|BM268014.1|BM268014
EST:     GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA                         GAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
genomic: GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAgtaagtgtca ... gtgtttgcagGAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
EST: gi|30088105|gb|CB886310.1|CB886310
EST:     GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA                         GAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
genomic: GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAgtaagtgtca ... gtgtttgcagGAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
EST: gi|101395308|gb|EB819584.1|EB819584
EST:     GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA                         GAAAAGATTAATGTTCATGGAGGAGCGGTATCCTTAGGACATCCTCTCGGG
genomic: GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAgtaagtgtca ... gtgtttgcagGAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
EST: gi|71309358|gb|DR790968.1|DR790968
EST:     AAAACTTCTTGGAATTCCTTCA                         GAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
genomic: AAAACTTCTTGGAATTCCTTCAgtaagtgtca ... gtgtttgcagGAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
EST: gi|211193824|gb|FL472434.1|FL472434
EST:     GCTGTTGCGCTTGCAAATCAAAAGCTTCTTGGAATTCCTTCA                         GAAAAGATTAATGTTCATGGAGGAGCTGTATCTTTAGGACATCCTCTCGGG
genomic: GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAgtaagtgtca ... gtgtttgcagGAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
EST: gi|78091101|gb|DV519475.1|DV519475
EST:     GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA                         GAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
genomic: GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAgtaagtgtca ... gtgtttgcagGAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
EST: gi|31909501|gb|CD650950.1|CD650950
EST:     GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA                         GAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
genomic: GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAgtaagtgtca ... gtgtttgcagGAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
EST: gi|110525002|gb|EE029186.1|EE029186
EST:     GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA                         GAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
genomic: GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAgtaagtgtca ... gtgtttgcagGAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
EST: gi|93281704|gb|EB673968.1|EB673968
EST:     GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA                         GAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
genomic: GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAgtaagtgtca ... gtgtttgcagGAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
EST: gi|78087734|gb|DV516127.1|DV516127
EST:     GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA                         GAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
genomic: GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAgtaagtgtca ... gtgtttgcagGAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
EST: gi|76921549|gb|DV168617.1|DV168617
EST:     GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA                         GAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
genomic: GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAgtaagtgtca ... gtgtttgcagGAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
EST: gi|33095848|gb|CF055842.1|CF055842
EST:     GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA                         GAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
genomic: GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAgtaagtgtca ... gtgtttgcagGAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
EST: gi|31909499|gb|CD650949.1|CD650949
EST:     GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA                         GAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
genomic: GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAgtaagtgtca ... gtgtttgcagGAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
EST: gi|76284259|gb|DV023827.1|DV023827
EST:     GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA                         GAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
genomic: GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAgtaagtgtca ... gtgtttgcagGAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
EST: gi|30306466|gb|CD001139.1|CD001139
EST:     GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA                         GAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
genomic: GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAgtaagtgtca ... gtgtttgcagGAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
EST: gi|149016999|gb|EE154316.2|EE154316
EST:     GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA                         GAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
genomic: GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAgtaagtgtca ... gtgtttgcagGAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
EST: gi|76936635|gb|DV174816.1|DV174816
EST:     GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA                         GAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
genomic: GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAgtaagtgtca ... gtgtttgcagGAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
EST: gi|211206261|gb|FL471226.1|FL471226
EST:     GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA                         GAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
genomic: GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAgtaagtgtca ... gtgtttgcagGAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
EST: gi|29544660|gb|CB605040.1|CB605040
EST:     GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA                         GAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
genomic: GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAgtaagtgtca ... gtgtttgcagGAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
EST: gi|32864390|gb|CF004072.1|CF004072
EST:     GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA                         GAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
genomic: GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAgtaagtgtca ... gtgtttgcagGAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
EST: gi|76017958|gb|DT945128.1|DT945128
EST:     GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA                         GAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
genomic: GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAgtaagtgtca ... gtgtttgcagGAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
EST: gi|32862142|gb|CF001824.1|CF001824
EST:     GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA                         GAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG
genomic: GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAgtaagtgtca ... gtgtttgcagGAAAAGATTAATGTTCATGGAGGAGCTGTATCCTTAGGACATCCTCTCGGG