Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTATGGATTATCTTGATAATGCTACAACCAAAGTGATGGCTGTGGTAATAATTCAAAGCATAATGAAAAACACAACCTGCATATCTACTTCTGACAAGgtaatatttcaagctatgatgttattactctacatattactaagcaactaatctaatgactctgtgttcttgtttcttgcag

Basic information

species Zea mays
transcript GRMZM5G844195_T03
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G844195_T02 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os03g58700.1 (Oryza sativa), 5'ss of exon 12
GGTTATGGATTATCTTGATAATGCTACAACCAAAGTGATGGCTGTGGTAATAATTCAAAGCATAATGAAAAACACAACCTGCATATCTACTTCTGACAAGgtaatatttcaa-gctatgatgtt----attactctacatattactaagcaactaatctaatgactctgtgttcttgtttcttgcag
|||||||||||| ||||||||| ||||||| ||||| |||||| | ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||  |||  |    ||  | ||    |||    |    | ||||| |  | | |||   | | ||||        | | ||||||
GGTTATGGATTACCTTGATAATTCTACAACAAAAGTTATGGCTCTTGTAATAATTCAAAGCATAATGAAGAACACGACTTGCATATCTACTTCTGACAAGgtaactttttgacatcatatttttgcttattgtcttgtcaactactatgggaatcatcatgtaattctggacatcattattttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31355991|gb|CD440348.1|CD440348
EST:     TAATTCAAAGCATAATGAAAAACACAACCTGCATATCTACTTCTGACAAG                         ATTGAGGCACTATTCGATTTAATTAAGGGGCTGATAAAGGATATGGATGGA
genomic: TAATTCAAAGCATAATGAAAAACACAACCTGCATATCTACTTCTGACAAGgtaatatttc ... tttcttgcagATTGAGGCACTATTCGATTTAATTAAGGGGCTGATAAAGGATATGGATGGA
EST: gi|31353910|gb|CD438267.1|CD438267
EST:     TAATTCAAAGCATAATGAAAAACACAACCTGCATATCTACTTCTGACAAG                         ATTGAGGCACTATTCGATTTAATTAAGGGGCTGATAAAGGATATGGATGGA
genomic: TAATTCAAAGCATAATGAAAAACACAACCTGCATATCTACTTCTGACAAGgtaatatttc ... tttcttgcagATTGAGGCACTATTCGATTTAATTAAGGGGCTGATAAAGGATATGGATGGA
EST: gi|31355451|gb|CD439808.1|CD439808
EST:     TAATTCAAAGCATAATGAAAAACACAACCTGCATATCTACTTCTGACAAG                         ATTGAGGCACTATTCGATTTAATTAAGGGGCTGATAAAGGATATGGATGGA
genomic: TAATTCAAAGCATAATGAAAAACACAACCTGCATATCTACTTCTGACAAGgtaatatttc ... tttcttgcagATTGAGGCACTATTCGATTTAATTAAGGGGCTGATAAAGGATATGGATGGA
EST: gi|33094690|gb|CF054684.1|CF054684
EST:     TAATTCAAAGCATAATGAAAAACACAACCTGCATATCTACTTCTGACAAG                         ATTGAGGCACTATTCGATTTAATTAAGGGGCTGATAAAGGATATGGATGGA
genomic: TAATTCAAAGCATAATGAAAAACACAACCTGCATATCTACTTCTGACAAGgtaatatttc ... tttcttgcagATTGAGGCACTATTCGATTTAATTAAGGGGCTGATAAAGGATATGGATGGA
EST: gi|33094433|gb|CF054427.1|CF054427
EST:     TAATTCAAAGCATAATGAAAAACACAACCTGCATATCTACTTCTGACAAG                         ATTGAGGCACTATTCGATTTAATTAAGGGGCTGATAAAGGATATGGGTGGA
genomic: TAATTCAAAGCATAATGAAAAACACAACCTGCATATCTACTTCTGACAAGgtaatatttc ... tttcttgcagATTGAGGCACTATTCGATTTAATTAAGGGGCTGATAAAGGATATGGATGGA
EST: gi|78088719|gb|DV517112.1|DV517112
EST:     TAATTCAAAGCATAATGAAAAACACAACCTGCATATCTACTTCTGACAAG                         ATTGAGGCACTATTCGATTTAATTAAGGGGCTGATAAAGGATATGGATGGA
genomic: TAATTCAAAGCATAATGAAAAACACAACCTGCATATCTACTTCTGACAAGgtaatatttc ... tttcttgcagATTGAGGCACTATTCGATTTAATTAAGGGGCTGATAAAGGATATGGATGGA