Sequence
atgc intronic sequence ATGC exonic sequenceACGCATAAATCTTCAGAAGGCTCTGTTTGAACTCGAAGAAACCAATAAGCGAAACCGCATGGAACTCCAGCATCTTGATGATTCTATTGCAAGGCATCAGgttggtgatcagtttcaaacacattcctattctgcagaacttagtgcaccaaaaagtacctctaatgttctactcccaacaacctctttggagacttctc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G837018_T02 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os03g56260.1 (Oryza sativa), 5'ss of exon 12
ACGCATAAATCTTCAGAAGGCTCTGTTTGAACTCGAAGAAACCAATAAGCGAAACCGCATGGAACTCCAGCATCTTGATGATTCTATTGCAAGGCATCAGgttggtga-tcagtt-tcaaacacattcctattctgcagaacttagtgcaccaaaaagtacct-ctaatgttctactcccaacaacctctttggagacttctc
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ACGCATTAATCTGCAGAAAGCACTGTTTGAACTTGAAGAAACCAATAAGCGCAATCGAATGGAGCTCCAGCATCTTGATGATGCAATTGCAAGACAACAGgttgattactcacctattcagtttgttgacaactcaaaaaact-actcttttacacactggcagcttacaagcctcttccaatcagaactctagttaatac--
upper sequence: GRMZM5G837018_T02 (Zea mays), 5'ss of exon 12
lower sequence: Vv07s0205g00140.t01 (Vitis vinifera), 5'ss of exon 12
ACGCATAAATCTTCAGAAGGCTCTGTTTGAACTCGAAGAAACCAATAAGCGAAACCGCATGGAACTCCAGCATCTTGATGATTCTATTGCAAGGCATCAGgttggtga---tcagtttcaa-acacattcctattctgcagaacttag---tgcaccaaaaagtacctctaatgttctactcccaacaacctctttggagacttctc
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ACGGATAAATTTACAGAAAGCTTTATTTGAACTTGAGGAAACTAACCTTCGAAACCGCACTGAACTTCAGCATCTTGATGATGCTATTGCAAAACAACAGgtacgagagggctagttttactatggagtttcatttataatgactgcaatttgtgttcattattgccttca----cttattctt--taatgtgcttggaccatttc-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|78122000|gb|DV540384.1|DV540384EST: GAAACCGCATGGAACTCCAGCATCTTGATGATTCTATTGCAAGGCATCAG GTGAAAGAAATGGACTCTA
genomic: GAAACCGCATGGAACTCCAGCATCTTGATGATTCTATTGCAAGGCATCAGgttggtgatc ... ttgtgttcagGTGAAAGAAATGGACTCTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACGCATAAATCTTCAGAAGGCTCTGTTTGAACTCGAAGAAACCAATAAGCGAAACCGCATGGAACTCCAGCATCTTGATGATTCTATTGCAAGGCATCAGgttggtgatcagtttcaaacacattcctattctgcagaacttagtgcaccaaaaagtacctctaatgttctactcccaacaacctctttggagacttctc
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