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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCATGGATTATCTTGATAATGCTACAACCAAAGTGATGGCTGTGGTAATAATTCAAAGCATAATGAAAAACACAACCTGCATATCTACTTCTGACAAGgtaatatttcatgttatgatgttattatttattactctgcatattactaagcaactaattgtatgcctttgtgttcttgtttcttgcag

Basic information

species Zea mays
transcript GRMZM5G825524_T01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G825524_T02 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os03g58700.1 (Oryza sativa), 5'ss of exon 12
GGTCATGGATTATCTTGATAATGCTACAACCAAAGTGATGGCTGTGGTAATAATTCAAAGCATAATGAAAAACACAACCTGCATATCTACTTCTGACAAGgtaatatttcatgttatgatgttattatttattactctgcatattactaagcaactaattgtatgcctttgtgttcttgtttcttgcag
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GGTTATGGATTACCTTGATAATTCTACAACAAAAGTTATGGCTCTTGTAATAATTCAAAGCATAATGAAGAACACGACTTGCATATCTACTTCTGACAAGgtaactttt--tgacatcatatttttgcttattgtcttgtcaactactatgggaatcatcatgtaattctggacatcattattttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211321313|gb|FL043262.1|FL043262
EST:     TTCAAAGCATAATGAAAAACACAACCTGCATATCTACTTCTGACAAG                         ATTGAGGCACTATTCGATTTAATTAAGGGGGCTGATAAAGGATATGGATGG
genomic: TTCAAAGCATAATGAAAAACACAACCTGCATATCTACTTCTGACAAGgtaatatttc ... tttcttgcagATTGAGGCACTATTCGATTTAATTAA-GGGGCTGATAAAGGATATGGATGG
EST: gi|31356431|gb|CD440788.1|CD440788
EST:     TAATTCAAAGCATAATGAAAAACACAACCTGCATATCTACTTCTGACAAG                         ATTGAGGCACTATTCGATTTAATTAAGGGGCTGATAAAGGATATGGATGGG
genomic: TAATTCAAAGCATAATGAAAAACACAACCTGCATATCTACTTCTGACAAGgtaatatttc ... tttcttgcagATTGAGGCACTATTCGATTTAATTAAGGGGCTGATAAAGGATATGGATGGG