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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCCAGGACATCGTTAATGCTTCAGACGTGTTCCTTCAAGAAGCGACATTCCCATATGTATATGCGAAAGTGGGAAAGATAGGGGACCTAAATCCAGAGgttagttgatgttcatcatgacttcctgtacattagcaaattatggctttgagagttgaaactattattttttatctgtgaattgtagtttatgtgcaat...

Basic information

species Zea mays
transcript GRMZM5G817551_T04
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101388186|gb|EB816107.1|EB816107
EST:     TCCCATATGTATATGCGAAAGTGGGAAAGATAGGGGACCTAAATCCAGAG                         AGAAGTAAGATGATCAGGAGGCTGGTGAATACTGTGCAATCGTTCCGCCAA
genomic: TCCCATATGTATATGCGAAAGTGGGAAAGATAGGGGACCTAAATCCAGAGgttagttgat ... tgtcatgcagAGAAGTAAGATGATCAGGAGGCTGGTGAATACTGTGCAATCGTTCCGCCAA
EST: gi|78027030|gb|DV495417.1|DV495417
EST:     TCCCATATGTATATGCGAAAGTGGGAAAGCTAGGGGACCTAAATCCAGAG                         AGAAGTAAGATGATCAGGAGGCTGGTGAATACTGTGCAATCGTTCCGCCAA
genomic: TCCCATATGTATATGCGAAAGTGGGAAAGATAGGGGACCTAAATCCAGAGgttagttgat ... tgtcatgcagAGAAGTAAGATGATCAGGAGGCTGGTGAATACTGTGCAATCGTTCCGCCAA
EST: gi|71769295|gb|DR967232.1|DR967232
EST:     TCCCATATGTATATGCGAAAGTGGGAAAGATAGGGGACCTAAATCCAGAG                         AGAAGTAAGATGATCAGGAGGCTGGTGAATACTGTGCAATCGTTCCGCCAA
genomic: TCCCATATGTATATGCGAAAGTGGGAAAGATAGGGGACCTAAATCCAGAGgttagttgat ... tgtcatgcagAGAAGTAAGATGATCAGGAGGCTGGTGAATACTGTGCAATCGTTCCGCCAA
EST: gi|45847408|gb|CN071351.1|CN071351
EST:     TCCCATATGTATATGCAAAAGTGGGAAAGATAGGGGACCTAAATCCAGAG                         AGAAGTAAGATGATCAGGAGGCTGGTGAATACTGTGCAATCGTTCCGCCAA
genomic: TCCCATATGTATATGCGAAAGTGGGAAAGATAGGGGACCTAAATCCAGAGgttagttgat ... tgtcatgcagAGAAGTAAGATGATCAGGAGGCTGGTGAATACTGTGCAATCGTTCCGCCAA
EST: gi|14585625|gb|BI135377.1|BI135377
EST:     TCCCATATGTATATGCAAAAGTGGGAAAGATAGGGGACCTAAATCCAGAG                         AGAAGTAAGATGATCAGGAGGCTGGTGAATACTGTGCAATCGTTCCGCCAA
genomic: TCCCATATGTATATGCGAAAGTGGGAAAGATAGGGGACCTAAATCCAGAGgttagttgat ... tgtcatgcagAGAAGTAAGATGATCAGGAGGCTGGTGAATACTGTGCAATCGTTCCGCCAA
EST: gi|67016635|gb|CO445384.1|CO445384
EST:     TCCCATATGTATATGCGAAAGTGGGAAAGATAGGGGACCTAAATCCAGAG                         AGAAGTAAGATGATCAGGAGGCTGGTGAATACTGTGCAATCGTTCCGCCAA
genomic: TCCCATATGTATATGCGAAAGTGGGAAAGATAGGGGACCTAAATCCAGAGgttagttgat ... tgtcatgcagAGAAGTAAGATGATCAGGAGGCTGGTGAATACTGTGCAATCGTTCCGCCAA
EST: gi|60350439|gb|DN217412.1|DN217412
EST:     TCCCATATGTATATGCGAAAGTGGGAAAGATAGGGGACCTAAATCCAGAG                         AGAAGTAAGATGATCAGGAGGCTGGTGAATACTGTGCAATCGTTCCGCCAA
genomic: TCCCATATGTATATGCGAAAGTGGGAAAGATAGGGGACCTAAATCCAGAGgttagttgat ... tgtcatgcagAGAAGTAAGATGATCAGGAGGCTGGTGAATACTGTGCAATCGTTCCGCCAA
EST: gi|14646248|gb|BI180437.1|BI180437
EST:     TCCCATATGTATATGCAAAAGTGGGAAAGATAGGGGACCTAAATCCAGAG                         AGAAGTAAGATGATCAGGAGGCTGGTGAATACTGTGCAATCGTTCCGCCAA
genomic: TCCCATATGTATATGCGAAAGTGGGAAAGATAGGGGACCTAAATCCAGAGgttagttgat ... tgtcatgcagAGAAGTAAGATGATCAGGAGGCTGGTGAATACTGTGCAATCGTTCCGCCAA
EST: gi|71314000|gb|DR793612.1|DR793612
EST:     TCCCATATGTATATGCGAAAGTGGGAAAGATAGGGGACCTAAATCCAGAG                         AGAAGTAAGATGATCAGGAGGCTGGTGAATACTGTGCAATCGTTCCGCCAA
genomic: TCCCATATGTATATGCGAAAGTGGGAAAGATAGGGGACCTAAATCCAGAGgttagttgat ... tgtcatgcagAGAAGTAAGATGATCAGGAGGCTGGTGAATACTGTGCAATCGTTCCGCCAA
EST: gi|32919582|gb|CF024394.1|CF024394
EST:     GGGAAAGATAGGGGACCTAAATCCAGAG                         AGAAGTAAGATGATCAGGAGGCTGGTGAATACTGTGCAATCGTTCCGCCAA
genomic: GGGAAAGATAGGGGACCTAAATCCAGAGgttagttgat ... tgtcatgcagAGAAGTAAGATGATCAGGAGGCTGGTGAATACTGTGCAATCGTTCCGCCAA
EST: gi|78093038|gb|DV521412.1|DV521412
EST:     TCCCATATGTATATGCGAAAGTGGGAAAGATAGGGGACCTAAATCCAGAG                         AGAAGTAAGATGATCAGGAGGCTGGTGAATACTGTGCAATCGTTCCGCCAA
genomic: TCCCATATGTATATGCGAAAGTGGGAAAGATAGGGGACCTAAATCCAGAGgttagttgat ... tgtcatgcagAGAAGTAAGATGATCAGGAGGCTGGTGAATACTGTGCAATCGTTCCGCCAA