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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCCGATGCGCATATCAGCAAAACCCGAGAAATTGCGATCAAgtaggtgaactacctatttgttatgatgggctagtgattgatttgtgtgtatatatgtttttactctgggactgcttgtggataattttttgaaagtaggttgttgagttaccttctttcattctatgcgcag

Basic information

species Zea mays
transcript GRMZM5G807767_T04
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211112381|gb|FL446192.1|FL446192
EST:     ATTCCGATGCGCATATCAGCAAAACCCGAGAAATTGCGATCAA                         GTATCGTCTGCACCGGAAGATGCTCCTACAGAAAATCATGGACGCACTGGA
genomic: ATTCCGATGCGCATATCAGCAAAACCCGAGAAATTGCGATCAAgtaggtgaac ... ctatgcgcagGTATCGTCTGCACCGGAAGATGCTCCTACAGAAAATCATGGACGCACTGGA
EST: gi|108953379|gb|EC364711.1|EC364711
EST:     ATTCCGATGCGCATATCAGCAAAACCCGAGAAATTGCGATCAA                         GTATCGTCTGCACCGGAAGATGCTCCTACAG
genomic: ATTCCGATGCGCATATCAGCAAAACCCGAGAAATTGCGATCAAgtaggtgaac ... ctatgcgcagGTATCGTCTGCACCGGAAGATGCTCCTACAG
EST: gi|13557816|gb|BG549172.1|BG549172
EST:     ATTCCGATGCGCATATCAGCAAAACCCGAGAAATTGCGATCAA                         GTATCGTCTGCACCGGAAGATGCTCCTACAGAAAATCATGGACGCACTGGA
genomic: ATTCCGATGCGCATATCAGCAAAACCCGAGAAATTGCGATCAAgtaggtgaac ... ctatgcgcagGTATCGTCTGCACCGGAAGATGCTCCTACAGAAAATCATGGACGCACTGGA
EST: gi|86471327|gb|DY237697.1|DY237697
EST:     ATATCAGCAAACCCCGAGAAATTGCGATCAA                         GTATCGTTTGCACCGGAAGATGCTCCTACAGAAAATCATGGACGCACTGGA
genomic: ATATCAGCAAAACCCGAGAAATTGCGATCAAgtaggtgaac ... ctatgcgcagGTATCGTCTGCACCGGAAGATGCTCCTACAGAAAATCATGGACGCACTGGA
EST: gi|32929396|gb|CF034208.1|CF034208
EST:     ATTCCGATGCGCATATCAGCAAAACCCGAGAAATTGCGATCAA                         GTATCGTCTGCACCGGAAGATGCTCCTACAGAAAATCATGGACACACTGGA
genomic: ATTCCGATGCGCATATCAGCAAAACCCGAGAAATTGCGATCAAgtaggtgaac ... ctatgcgcagGTATCGTCTGCACCGGAAGATGCTCCTACAGAAAATCATGGACGCACTGGA