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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGGAGGCTACAGGCAGCTTTGGGAGAACAATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAATgtagccccctttgctgtgactgcattcttattttttcatttgaatgatattcacttcatatgccctttacacaaaaggaatcatttaggtccaacttgtc...

Basic information

species Zea mays
transcript GRMZM2G704032_T03
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G704032_T03 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os03g49900.1 (Oryza sativa), 5'ss of exon 12
GTTTGGAGGCTACAGGCAGCTTTGGGAGAACAATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAATgtagc-cccctttgctgtgactgcattcttattttttcatttgaatgatattcacttcatatgccctttacacaaaag-gaatcatttaggtccaacttgtc
|| |||||||| || |||||||||||||| ||||| ||||| ||||| |||||||| ||||||| ||||||||||||||||||| |  | | |||       || | | | ||  ||| |  | |   | |||      |||   ||| || |||  |  || ||  |||  |  |       
GTATGGAGGCTCCAAGCAGCTTTGGGAGAGCAATCAGAAATTACCAAATGTACCAAGCAGGAATTTGAAAGGCTTCAAAATgtaccatctccttgtgacttgtgaagtttcatcattttacattatataaattggtgcaatacatcctatagacatgattgagtccattaacttgaggaca--

upper sequence: GRMZM2G704032_T03 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA17G13040.1 (Glycine max), 5'ss of exon 12
GTTTGGAGGCTACAGGCAGCTTTGGGAGAACAATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAATgtagccccctttgctgtgactgcattcttattttttcatttgaatgatattcacttcatatgccctttacacaaaagga-atcatttaggtccaacttgtc-----
|||||||| || ||||||||| | || |||||| ||||||| || ||||  | | ||||||| |||||||| ||||||||||||   | | |  |  | | ||  |    ||||| | | |   ||| || | |     |||  | |  | |       | || || || |   ||    ||     
GTTTGGAGACTCCAGGCAGCTCTTGGCGAACAAACTGAAATTACAAAGTTCAGCCAACAGGAGTATGAAAGACTTCAAAATgtataacacataaccttaaatgagt---aattttgtgagtc--atg-tacttatgctgtatatcttccaaagtttctaatatgatgtatgaagaagccctccacaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71761132|gb|DR959069.1|DR959069
EST:     AATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAAT                         GAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTA
genomic: AATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAATgtagccccct ... cgtcttttagGAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTA
EST: gi|149000343|gb|EE037503.2|EE037503
EST:     AATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAAT                         GAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTA
genomic: AATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAATgtagccccct ... cgtcttttagGAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTA
EST: gi|149107037|gb|EE188931.2|EE188931
EST:     AATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAAT                         GAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTA
genomic: AATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAATgtagccccct ... cgtcttttagGAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTA
EST: gi|6022166|gb|AW067094.1|AW067094
EST:     AAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAAT                         GAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTA
genomic: AAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAATgtagccccct ... cgtcttttagGAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTA
EST: gi|110944040|gb|EE164197.1|EE164197
EST:     AATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAAT                         GAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTA
genomic: AATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAATgtagccccct ... cgtcttttagGAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTA
EST: gi|78023713|gb|DV492100.1|DV492100
EST:     AATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAAT                         GAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTA
genomic: AATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAATgtagccccct ... cgtcttttagGAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTA
EST: gi|18659625|gb|BM500436.1|BM500436
EST:     GGAATATGAAAGGCTTCAAAAT                         GAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTA
genomic: GGAATATGAAAGGCTTCAAAATgtagccccct ... cgtcttttagGAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTA
EST: gi|166675211|gb|EG212155.1|EG212155
EST:     AATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAAT                         GAGAAGGTTCTTTGTAGGATTTGTTAT
genomic: AATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAATgtagccccct ... cgtcttttagGAGAAGGTTCTTTGTAGGATTTGTTAT
EST: gi|149083045|gb|EE172299.2|EE172299
EST:     CAAGTGTCCCAAACAGGAATATGAAAGGCTTCAAAAT                         GAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTA
genomic: CAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAATgtagccccct ... cgtcttttagGAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTA
EST: gi|148975093|gb|EE025660.2|EE025660
EST:     AATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAAT                         GAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGTTA
genomic: AATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAATgtagccccct ... cgtcttttagGAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTA
EST: gi|60356237|gb|DN223210.1|DN223210
EST:     AATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAAT                         GAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTA
genomic: AATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAATgtagccccct ... cgtcttttagGAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTA