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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAAGACTTCAGCATATATTTGCTTCATCAAGTCACACATATGGTGGCTTGACTCTGGATTTACATTGTAATCGATTGGGTCCAACTGCTTTATTTCAGgtttttacaatcccagaaacttatctatcaaagtgaaataatatgatactcctatcatcccatcggaattttggcttgaaattctccattcagcttctgc...

Basic information

species Zea mays
transcript GRMZM2G472023_T03
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G472023_T02 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os02g54170.1 (Oryza sativa), 5'ss of exon 3
TGAAAGACTTCAGCATATATTTGCTTCATCAAGTCACACATATGGTGGCTTGACTCTGGATTTACATTGTAATCGATTGGGTCCAACTGCTTTATTTCAGg--tttttacaatcccagaaacttatctatcaaagtgaaataatatgatactcctatcat------cccatcggaattttggcttgaaatt--ctccattcagcttctgc
||| || ||||| || |||||| |||||||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||  ||||||| |||||  |||||| | |||||||||||||  | | | || | ||    |      | ||    ||||     || ||||   ||  || |         
TGAGAGGCTTCAACAAATATTTTCTTCATCAAGCCAAACATATGGTGGCTTGACACTGGATTTACATTGTAATCGATTTGGTCCAACTGCTTTATTTCAGgtctttttactatccct-aaacttgtttatcaaagtgaaactacaagttatttctgcttttgaaagctcaaaaaaattgaacattaaaatggactggatcc---------

upper sequence: GRMZM2G472023_T02 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os02g54280.1 (Oryza sativa), 5'ss of exon 13
TGAAAGACTTCAGCATATATTTGCTTCATCAAGTCACACATATGGTGGCTTGACTCTGGATTTACATTGTAATCGATTGGGTCCAACTGCTTTATTTCAGgt--ttttacaatcccagaaacttatctatcaaagtgaaataatatgatactcctatc------atcccatcggaattttggcttgaaattctccat-tcagcttctgc-------------------------------------
                                             ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||  |||||| |||||  |||||| | |||||||||||||  | | | || | ||         | | ||    ||||     || ||||   |    ||  ||||| |                                     
---------------------------------------------TGGCTTGACACTGGATTTACATTGTAATCGATTTGGTCCAACTGCTTTATTTCAGGTCTTTTTACTATCCCT-AAACTTGTTTATCAAAGTGAAACTACAGgttatttctgcttttgaaagctcaaaaaaattgcacattaaaatggactggatcctcttctacaataaaaggaaaacttgactcttggggagagatgttc

upper sequence: GRMZM2G472023_T02 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA08G15560.1 (Glycine max), 5'ss of exon 13
TGAAAGACTTCAGCATATATTTGCTTCATCAAGTCACACATATGGTGGCTTGACTCTGGATTTACATTGTAATCGATTGGGTCCAACTGCTTTATTTCAGgtttttacaatcccagaaacttatct-atcaaagtgaaataatatgatactcctatcatcccatcggaattttggcttgaaattct--ccattcagcttctgc
 || | ||| ||  |  | ||  |  ||||| | ||  | ||||||||||| ||||||||||| ||||| |||||||| || |||||  | || |||||||| |  | | | |  | |||   | | ||          |  | |    ||  | | ||          ||  || || ||||  |      ||     ||  
CGAGAAACTGCAAAAGGTGTTCACAGCATCAGGACAATCTTATGGTGGCTTAACTCTGGATTTGCATTGCAATCGATTTGGCCCAACATCATTGTTTCAGgtatg-atactacttgcaaccattttgatgtttacttgtttctcttccccttgttttatgtttctaactttgaggtttaaaatgatggttgctctatacct--

upper sequence: GRMZM2G472023_T02 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA05G32290.1 (Glycine max), 5'ss of exon 13
TGAAAGACTTCAGCATATATTTGCTTCATCAAGTCACACATATGGTGGCTTGACTCTGGATTTACATTGTAATCGATTGGGTCCAACTGCTTTATTTCAGgtttttacaatcccagaaacttatct-atcaaagtgaaataatatgatactcctatcatcccatcggaattttggcttg--aaattctccattcagcttctgc
 |||| ||||||  |  | ||  |  ||||| | ||  | |||||||| || ||||||||||| ||||| |||||||| || ||||| || || |||||||| |  | | | |  | |||   | | |||   |     |  | |    ||  |  |||         |||    ||||  ||||      || || |     
CGAAAAACTTCAAAAGGTGTTCACAGCATCAGGACAATCTTATGGTGGGTTAACTCTGGATTTGCATTGCAATCGATTTGGCCCAACAGCATTGTTTCAGgtatg-atactacttgcaacccttttgatctttgcttgtttctcttccccttgttccatgtttctaacattggatcttgttaaatctgatttttaggtatg--

upper sequence: GRMZM2G472023_T02 (Zea mays), 5'ss of exon 12
lower sequence: AT3G18730.1 (Arabidopsis thaliana), 5'ss of exon 11
TGAAAGACTTCAGCATATATTTGCTTCATCAAGTCACACATATGGTGGCTTGACTCTGGATTTACATTGTAATCGATTGGGTCCAACTGCTTTATTTCAGgtttttacaatcccagaaacttatctatcaaagtgaaataatatgatactcctatcatcccatcggaattttggcttgaaattctccattcagcttctgc
 || | | |  | ||  | ||||| |||||||| || |  |||||||  || ||| ||||||| || || |||||||| |||||||||||||| ||||||||    ||| | | ||            |||||  | | ||| | | |     ||  |    ||| | | |    || | || ||||  |   |      
GGAGAAATTGAAACAACTTTTTGCCTCATCAAGCCAGATGTATGGTGCTTTAACTTTGGATTTGCACTGCAATCGATTTGGTCCAACTGCTTTGTTTCAGgt----acactactaggc---------ccaaagctagaaaatttcacatattcatgttattttcgtattat----ttaatatactcctctttaccag---