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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCTGTTTATAAGATTCAATTCAAGTTCCGTCGGAGGGATATTCCACCAAATTTCGATGTTGATCACCTAGgtaaactgtactaaatgcattatccaaactccaggcaaatttttaatttttcttcacacacacaattgtatggtttttgttgggtttcaactaccctgga...

Basic information

species Zea mays
transcript GRMZM2G470438_T03
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G470438_T03 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os03g06900.1 (Oryza sativa), 5'ss of exon 18
GCCCTGTTTATAAGATTCAATTCAAGTTCCGTCGGAGGGATATTCCACCAAATTTCGATGTTGATCACCTAGgtaaactgtactaaatgcatta----tccaaactccaggcaaatttttaatttttcttcacacacacaattgtatggtttttgttgggtttcaactaccctgga------------------------------------------------------
| || ||||||||||||||||| ||||| || || |||||||||||||||||||| ||||| |||||||| |||| ||| | |||  |  |||     |||| ||||     |  |||| | ||     | | |    |||        |  || ||   | |||||        |                                                      
GTCCGGTTTATAAGATTCAATTTAAGTTTCGGCGAAGGGATATTCCACCAAATTTTGATGTCGATCACCTCGgtatactctcctatttcaattgaagttccatactcactttagtttttcagttaaaacttatatgaccaaaaaacaaatccttctttcctctcaacacgtacacatcttttgtttggttacatactaaggtgattcggacatatttcatgctgttatag