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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGAGCACTGGGAGCACGTCTGACAGGAGCTGGGTGGGGTGGCTGCGCGGTTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagctgtcttgtttacaactggagtagtgtgatggtgcatgcatcctctgtttttctttctccatggcttggctttggctctaatgcttatttttacgcag

Basic information

species Zea mays
transcript GRMZM2G458549_T01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G458549_T01 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os03g61710.1 (Oryza sativa), 5'ss of exon 12
CGGAGCACTGGGAGCACGTCTGACAGGAGCTGGGTGGGGTGGCTGCGCGGTTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaa---------gcaagctgtcttgtttac-----aactggagta---gtgtgatggtgcatgcatcctctgttt-------ttctttctccatggcttggctttggctctaatgcttatttttacgcag-----------------------------------------
||||||||| ||||||||||| || ||||| |||||||||||||| || || ||| |||| |||||   ||| ||||| ||||| ||||| ||  |||||| ||         | ||||| |  | ||||      ||      ||   |  ||||  | ||| |||  ||            |    ||| |||   |    |    |   |   |  |  | |    |                                          
CGGAGCACTCGGAGCACGTCTTACTGGAGCAGGGTGGGGTGGCTGTGCAGTCGCTTTGGTTAAGGAAGGCATTGTCCCGCAGTTTATTCTCAATTTAAAGgtaaattaaatctgtaagctcttgtctttatccaataagcaacatatatgcatgataatacatacataatccacgcagacaactatagtctacatatttcaagtgaaacagcagcacccaactctgtttattggaggtgatcctcactgacaagatatacattttattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50337770|gb|CO532896.1|CO532896
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|60349907|gb|DN216880.1|DN216880
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|60398990|gb|DN231806.1|DN231806
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|67018909|gb|CO447658.1|CO447658
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|149071532|gb|EE159923.2|EE159923
EST:     TTGCTTTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTTTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|76011230|gb|DT938400.1|DT938400
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|93014043|gb|EB639563.1|EB639563
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTTTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|78111011|gb|DV529408.1|DV529408
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|60338971|gb|DN205944.1|DN205944
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|110524608|gb|EE028792.1|EE028792
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTTTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|148951726|gb|EC897479.2|EC897479
EST:     TTGCTTTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|71434413|gb|DR815463.1|DR815463
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|85153037|gb|DW587944.1|DW587944
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|116826426|gb|EC870214.1|EC870214
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCCCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|88746509|gb|DY530650.1|DY530650
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTTTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|60345732|gb|DN212705.1|DN212705
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|87152649|gb|DY397438.1|DY397438
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCCCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|89764287|gb|DY691149.1|DY691149
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|37386348|gb|CF630360.1|CF630360
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGTGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|148960155|gb|EE153405.2|EE153405
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|17969988|gb|BM276757.1|BM276757
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCCCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|78025070|gb|DV493457.1|DV493457
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|71434164|gb|DR815214.1|DR815214
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|67016317|gb|CO445066.1|CO445066
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|76912625|gb|DV164824.1|DV164824
EST:     TTGCTTTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTTTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|71762160|gb|DR960097.1|DR960097
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|211541592|gb|FL022795.1|FL022795
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCCCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGA
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGA
EST: gi|71318358|gb|DR795941.1|DR795941
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|71434414|gb|DR815464.1|DR815464
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|71447465|gb|DR828515.1|DR828515
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|211135219|gb|FL444577.1|FL444577
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCCCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|74231837|gb|DT639751.1|DT639751
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTTTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|50337771|gb|CO532897.1|CO532897
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|71773515|gb|DR971415.1|DR971415
EST:     TTGCTTTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTTTGAAACTAAAG                         GAAATGTTCTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|78085243|gb|DV513636.1|DV513636
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTTTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|50330092|gb|CO525218.1|CO525218
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTTTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 80

CGGAGCACTGGGAGCACGTCTGACAGGAGCTGGGTGGGGTGGCTGCGCGGTTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGATGTGGGCCTATACGTGTTCGCATCCAAGCCGTCGAGCGGCGCGGCCATAC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 155

CGGAGCACTGGGAGCACGTCTGACAGGAGCTGGGTGGGGTGGCTGCGCGGTTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGATGTGGGCCTATACGTGTTCGCATCCAAGCCGTCGAGCGGCGCGGCCATAC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 71

CGGAGCACTGGGAGCACGTCTGACAGGAGCTGGGTGGGGTGGCTGCGCGGTTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGATGTGGGCCTATACGTGTTCGCATCCAAGCCGTCGAGCGGCGCGGCCATAC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 211

CGGAGCACTGGGAGCACGTCTGACAGGAGCTGGGTGGGGTGGCTGCGCGGTTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGATGTGGGCCTATACGTGTTCGCATCCAAGCCGTCGAGCGGCGCGGCCATAC


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGGAGCACTGGGAGCACGTCTGACAGGAGCTGGGTGGGGTGGCTGCGCGGTTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagctgtcttgtttacaactggagtagtgtgatggtgcatgcatcctctgtttttctttctccatggcttggctttggctctaatgcttatttttacgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG