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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTAGGATCCAACGGGAGATACAACTCTACTGGAAATGAAACTAGGCAGGTCAATGCAGAACAAGGTTCCCTGATAAATGGGGGTTTACTTGCGCCCGgtatccatttaaaattttacgttatttgattaagctatataaagaatttttattctcgcaccttgatgtccagcttgtctcatgcttaattatgggttcaaaccag

Basic information

species Zea mays
transcript GRMZM2G452580_T01
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19350802|gb|BM895334.1|BM895334
EST:     GGTCAATACAGAACAAGGTTCCCTGATAAATGGGGGTTTACTTGCGCCCG                         CAGGTCAGCGTGCCCCAA-TGATGTTGTAGGCAATGATGATGGGTTCTTGA
genomic: GGTCAATGCAGAACAAGGTTCCCTGATAAATGGGGGTTTACTTGCGCCCGgtatccattt ... ttcaaaccagCAGGTCAGCGTGCCCCAAATGATGCTGTAGGCAATGATGATGGGTTCTTGA
EST: gi|67015738|gb|CO444487.1|CO444487
EST:     GGGGTTTACTTGCG-CC-                         C-GGTCAGCGTGCCCCAAA-GATGCTGTAGGCAATGATGATGGGNNTTCTT
genomic: GGGGTTTACTTGCGCCCGgtatccattt ... ttcaaaccagCAGGTCAGCGTGCCCCAAATGATGCTGTAGGCAATGATGATGGG--TTCTT
EST: gi|211320220|gb|FL223755.1|FL223755
EST:     GGTCAATACAGAACAAGGTTCCCTGATAAATGGGGGTTTACTTGCGCCCG                         CAGGTCAGCGTGCCCCAAATGATGTTGTAGGCAATGATGATGGGTTCTTGA
genomic: GGTCAATGCAGAACAAGGTTCCCTGATAAATGGGGGTTTACTTGCGCCCGgtatccattt ... ttcaaaccagCAGGTCAGCGTGCCCCAAATGATGCTGTAGGCAATGATGATGGGTTCTTGA
EST: gi|87152853|gb|DY397642.1|DY397642
EST:     GGTCAATACAGAACAAGGTTCCCTGATAAATGGGGGTTTACTTGCGCCCG                         CAGGTCAGCGTGCCCCAAATGATGTTGTAGGCAATGATGATGGGTTCTTGA
genomic: GGTCAATGCAGAACAAGGTTCCCTGATAAATGGGGGTTTACTTGCGCCCGgtatccattt ... ttcaaaccagCAGGTCAGCGTGCCCCAAATGATGCTGTAGGCAATGATGATGGGTTCTTGA
EST: gi|91048757|gb|EB159175.1|EB159175
EST:     GGTCAATGCAGAACAAGGTTCCCTGATAAATGGGGGTTTACTTGCG-CC-                         C-GGTCAGCGTGCCCCAAATGATGCTGTAGGCAATGATGATGGGTTCTTGA
genomic: GGTCAATGCAGAACAAGGTTCCCTGATAAATGGGGGTTTACTTGCGCCCGgtatccattt ... ttcaaaccagCAGGTCAGCGTGCCCCAAATGATGCTGTAGGCAATGATGATGGGTTCTTGA
EST: gi|32805129|gb|CD957365.1|CD957365
EST:     GGTCAATGCAGAACAAGGTTCCCTGATAAATGGGGGTTTACTTGCGCCCG                         CAGGTCAGCGTGCCCCAAATGATGCTGCAGGCAATGACGATGGGTTCTTGA
genomic: GGTCAATGCAGAACAAGGTTCCCTGATAAATGGGGGTTTACTTGCGCCCGgtatccattt ... ttcaaaccagCAGGTCAGCGTGCCCCAAATGATGCTGTAGGCAATGATGATGGGTTCTTGA