Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTAGAGACAATTATTTGGTTTTACTGGCCCTAATTTATTGTGTAACCGGCATAGGTTACTCTTTTGCTATTTGGTTTGAGCTCGGATTAGCACAGTTGgtaagtagggcatctcttttttgtaatcatgatattaactctactgaaggtggctaatgaactataatgttgtag

Basic information

species Zea mays
transcript GRMZM2G430675_T03
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G430675_T03 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os10g30610.1 (Oryza sativa), 5'ss of exon 11
TCTTAGAGACAATTATTTGGTTTTACTGGCCCTAATTTATTGTGTAACCGGCATAGGTTACTCTTTTGCTATTTGGTTTGAGCTCGGATTAGCACAGTTGgtaagtagggcatctctt--ttttgtaatcatgatattaactctactgaaggtggctaa-tgaactataatgttgtag
  ||| |||||| |||||||| ||  |||| ||  ||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||| || |||||||| |    | ||     | |  | ||| ||| |||  |  |     |  ||||||| |||||| |  | ||| ||
ATTTAAAGACAACTATTTGGTGTTTTTGGCACTGGTTTATTGTGTAACTGGCATAGGTTATACTTTTGCTATTTGGTTTGAGCTCGGATTAGCTCAATTGgtaagcataataacttaaaatatcttcatcctgacattggcggtgtc--atttggctaaatgaacttttctcttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32923118|gb|CF027930.1|CF027930
EST:     GCATAGGTTACTCTTTTGCTATTTGGTTTGAGCTCGGATTAGCACAGTTG                         AGCTCTGCAATAGTA
genomic: GCATAGGTTACTCTTTTGCTATTTGGTTTGAGCTCGGATTAGCACAGTTGgtaagtaggg ... aatgttgtagAGCTCTGCAATAGTA
EST: gi|32921859|gb|CF026671.1|CF026671
EST:     GCATAGGTTACTCTTTTGCTATTTGGTTTGAGCTCGGATTAGCACAGTTG                         AGCTCTGCAATAGT
genomic: GCATAGGTTACTCTTTTGCTATTTGGTTTGAGCTCGGATTAGCACAGTTGgtaagtaggg ... aatgttgtagAGCTCTGCAATAGT
EST: gi|32920474|gb|CF025286.1|CF025286
EST:     GCATAGGTTACTCTTTTGCTATTTGGTTTGAGCTCGGATTAGCACAGTTG                         AGCTCTGCAATAGTA
genomic: GCATAGGTTACTCTTTTGCTATTTGGTTTGAGCTCGGATTAGCACAGTTGgtaagtaggg ... aatgttgtagAGCTCTGCAATAGTA
EST: gi|32922329|gb|CF027141.1|CF027141
EST:     GCATAGGTTACTCTTTTGCTATTTGGTTTGAGCTCGGATTAGCACAGTTG                         AGCTCTGCAATAGTA
genomic: GCATAGGTTACTCTTTTGCTATTTGGTTTGAGCTCGGATTAGCACAGTTGgtaagtaggg ... aatgttgtagAGCTCTGCAATAGTA
EST: gi|32922314|gb|CF027126.1|CF027126
EST:     GCATAGGTTACTCTTTTGCTATTTGGTTTGAGCTCGGATTAGCACAGTTG                         AGCTCTGCAATAGTA
genomic: GCATAGGTTACTCTTTTGCTATTTGGTTTGAGCTCGGATTAGCACAGTTGgtaagtaggg ... aatgttgtagAGCTCTGCAATAGTA