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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGCATCGGTTGGGGGATCTATTTTATCGCCTAGTgtaagcattttcaacatgttttcaacactaattttggtgcatcatcactaacgatccttttatttatatataaaatcacag

Basic information

species Zea mays
transcript GRMZM2G421857_T03
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4609925|gb|AI600764.1|AI600764
EST:     AAAGCATCGGTTGGGGGATCTATTTTATCGCCTAGT                         ATCCCAAAAGTTCGAGGATCCTGCAGAAGGCGAAGAAGCTTTGGTCGGCAA
genomic: AAAGCATCGGTTGGGGGATCTATTTTATCGCCTAGTgtaagcattt ... aaaatcacagATCCCAAAAGTTCGAGGATCCTGCAGAAGGCGAAGAAGCTTTGGTCGGCAA
EST: gi|6918550|gb|AW400080.1|AW400080
EST:     GTTGGGGGATCTATTTTATCGCCTAGT                         ATCCCAAAAGTTCGAGGATCCTGCAGAAGGCGAAGAAGCTTTGGTCGGCAA
genomic: GTTGGGGGATCTATTTTATCGCCTAGTgtaagcattt ... aaaatcacagATCCCAAAAGTTCGAGGATCCTGCAGAAGGCGAAGAAGCTTTGGTCGGCAA
EST: gi|1298515|gb|W21765.1|W21765
EST:     GTTGGGGGATCTATTTTATCGCCTAGT                         ATCCCAAAAGTTCGAGGATCCTGCAGAAGGCGAAGAAGCTTTGGTCGGCAA
genomic: GTTGGGGGATCTATTTTATCGCCTAGTgtaagcattt ... aaaatcacagATCCCAAAAGTTCGAGGATCCTGCAGAAGGCGAAGAAGCTTTGGTCGGCAA
EST: gi|40303281|gb|CK347668.1|CK347668
EST:     ATCGGTTGGGGGATCTATTTTATCGCCTAGT                         ATCCCAAAAGTTCGAGGATCCTGCAGAAGGCGAAGAAGCTTTGGTCGGCAA
genomic: ATCGGTTGGGGGATCTATTTTATCGCCTAGTgtaagcattt ... aaaatcacagATCCCAAAAGTTCGAGGATCCTGCAGAAGGCGAAGAAGCTTTGGTCGGCAA