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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGCGCTTTGTGGATGCCAGCAGATGTTCCATGCATGTTCTTCTATTAGTACATTGATATGCTCAGAGGGATCTCAACTTATTGATTTGCTGTCACCAGgtagaatactatttttaatgcattttctcattagttttgttgcacactcatatgttgctccttttgtcttcattttttattttccttgtttgtctgctttaagttagtataatagaatttaatgcattaggtaacccttggatgtgataactatttgcag

Basic information

species Zea mays
transcript GRMZM2G421541_T02
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G421541_T02 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os09g24220.1 (Oryza sativa), 5'ss of exon 12
TCTGCGCTTTGTGGATGCCAGCAGATGTTCCATGCATGTTCTTCTATTAGTACATTGATATGCTCAGAGGGATCT---CAACTTATTGATTTGCTGTCACCAGgtagaatactatttttaatgcattttctcattagttttgttgcacactcatatgttgctccttttgtcttcattttttattttccttgtttgtctgct--ttaagttagtataatagaatttaatgcattaggtaacccttggatgtgataactatttgcag
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---GCTCTTCGTGGTTGCCAGCAGATGTTCCAAGCATGCTCTTCTATTAGTATGTTGACAAGCACAGATGGATCTTCTCTATTAAATGATTTGTTATCACTAGgtatgagctgagta--actgaattctctcactagtttctcagtgcacccatatgtgactcttttgatcttcaatatcatttccgttggtctggttgcttattacattgtttcaattacatttattgtgtaatgtgagg-ttgcatgtgttaactgtttacag