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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTCGGTTAAGATCTATTATGGACTACCCAAATCTTAAACAACAACTTTTTCGAATGCGAATCCGGGATATCTTGGTCCACCCATTGCAGCCATTAAAGgtctaacacactcccaaccacttctactgtatctttcagcagtaactgtgtttttcctttatataaatatacatgatgttaattgacatgacttttgatgttatag

Basic information

species Zea mays
transcript GRMZM2G415846_T02
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G415846_T02 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os06g47350.2 (Oryza sativa), 5'ss of exon 14
CTTTCGGTTAAGATCTATTATGGACTACCCAAATCTTAAACAACAACTTTTTCGAATGCGAATCCGGGATATCTTGGTCCACCCATTGCAGCCATTAAAGgtct----aacac--actcccaaccacttctactgtatcttt----cagcagtaactgtgtttttcctttat-----ataaatatacatgatgttaattgac-atgacttttgatgttatag--------------------------------------------------------------------------
|||||| ||||||||||||||||||||||||||||||||   ||| ||||||   |||| | |  |  ||||||||   |||||| || | || |||||||| |    | |||  | |  |  || ||||||   |  ||||    |     |||   | | |||   ||||      || |||| |    |  ||  ||    ||  |||   || | |                                                                            
CTTTCGCTTAAGATCTATTATGGACTACCCAAATCTTAAGGCACAGCTTTTTAACATGCCATTTGGATATATCTTGACACACCCACTGGAACCTTTAAAGgtttgtacagcaccaattgtctgccccttctagatttcctttttggccattataatcatctctttttgttattttcagtacatatccccattagtagctgtttgtgtgtttgactgctgtgttctttaagtccataaatcttaattgtttactattagttacctttgagaactcacatggctatttgatattttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211144259|gb|FL374578.1|FL374578
EST:     TTCGAATGCGAATCCGGGATATCTTGGTCCACCCATTGCAGCCATTAAAG                         GTGTGCTTGCCTTCAATAGTGAATGAGTTCCTGAGACAGGCTACAGCTGCG
genomic: TTCGAATGCGAATCCGGGATATCTTGGTCCACCCATTGCAGCCATTAAAGgtctaacaca ... gatgttatagGTGTGCTTGCCTTCAATAGTGAATGAGTTCCTGAGACAGGCTACAGCTGCG
EST: gi|211216852|gb|FL374182.1|FL374182
EST:     TTCGAATGCGAATCCGGGATATCTTGGTCCACCCATTGCAGCCATTAAAG                         GTGTGCTTGCCTTCAATAGTGAATGAGTTCCTGAGACAGGCTACAGCTGCG
genomic: TTCGAATGCGAATCCGGGATATCTTGGTCCACCCATTGCAGCCATTAAAGgtctaacaca ... gatgttatagGTGTGCTTGCCTTCAATAGTGAATGAGTTCCTGAGACAGGCTACAGCTGCG
EST: gi|6918320|gb|AW399850.1|AW399850
EST:     TTCGAATGCGAATCCGGGATATCTTGGTCCACCCATTGCAGCCATTAAAG                         GTGTGCTTGCCTTCAATAGTGAATGAGTTCCTGAGACAGGCTACAGCTGCG
genomic: TTCGAATGCGAATCCGGGATATCTTGGTCCACCCATTGCAGCCATTAAAGgtctaacaca ... gatgttatagGTGTGCTTGCCTTCAATAGTGAATGAGTTCCTGAGACAGGCTACAGCTGCG
EST: gi|211405623|gb|FL391563.1|FL391563
EST:     TTCGAATGCGAATCCGGGATATCTTGGTCCACCCATTGCAGCCATTAAAG                         GTGTGCTTGCCTTCAATAGTGAATGAGTTCCTGAGACAGGCTACAGCTGCG
genomic: TTCGAATGCGAATCCGGGATATCTTGGTCCACCCATTGCAGCCATTAAAGgtctaacaca ... gatgttatagGTGTGCTTGCCTTCAATAGTGAATGAGTTCCTGAGACAGGCTACAGCTGCG
EST: gi|14245072|gb|BG873654.1|BG873654
EST:     TTCGAATGCGAATCCGGGATATCTTGGTCCACCCATTGCAGCCATTAAAG                         GTGTGCTTGCCTTCAATAGTGAATGAGTTCCTGAGACAGGCTACAGCTGCG
genomic: TTCGAATGCGAATCCGGGATATCTTGGTCCACCCATTGCAGCCATTAAAGgtctaacaca ... gatgttatagGTGTGCTTGCCTTCAATAGTGAATGAGTTCCTGAGACAGGCTACAGCTGCG