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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTGTCTGTAATTGGGAAGGGCGGGACCAGTCCCCTAGTCACGAAGAACCGATGACAGCCAGTTCTTCGCTGGCTCCTACAGGCCGTCCAAATTCATCTgtatgtctaaaacaagccataaaccttttccttttatatgttctggtacttcatttttttaactcccaaaggttgtaaatatgtgggtttgttaagcttg...

Basic information

species Zea mays
transcript GRMZM2G406553_T04
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26456707|gb|CA828290.1|CA828290
EST:     CGATGACAGCCAGTTCTTCGCTGGCTCCAACAGGCCGTCCAAATTCATCT                         AGAGGAAGCAGTCAAGCTTCTGAAACTCCAATCATAGCTAATGATGAAGAT
genomic: CGATGACAGCCAGTTCTTCGCTGGCTCCTACAGGCCGTCCAAATTCATCTgtatgtctaa ... tcttctgcagAGAGGAAGCAGTCAAGCTTCTGAAACTCCAATCATAGCTAATGATGAAGAT
EST: gi|211372261|gb|FL314699.1|FL314699
EST:     CGATGACAGCCAGTTCTTCGCTGGCTCCTACAGGCCGTCCAAATTCATCT                         AGAGGAAGCAGTCAAGCTTCTGAAACTCCAATCATAGCTAATGATGAAGAT
genomic: CGATGACAGCCAGTTCTTCGCTGGCTCCTACAGGCCGTCCAAATTCATCTgtatgtctaa ... tcttctgcagAGAGGAAGCAGTCAAGCTTCTGAAACTCCAATCATAGCTAATGATGAAGAT
EST: gi|211107764|gb|FL329442.1|FL329442
EST:     CGATGACAGCCAGTTCTTCGCTGGCTCCTACAGGCCGTCCAAATTCATCT                         AGAGGAAGCAGTCAAGCTTCTGAAACTCCAATCATAGCTAATGATGAAGAT
genomic: CGATGACAGCCAGTTCTTCGCTGGCTCCTACAGGCCGTCCAAATTCATCTgtatgtctaa ... tcttctgcagAGAGGAAGCAGTCAAGCTTCTGAAACTCCAATCATAGCTAATGATGAAGAT
EST: gi|20508175|gb|BQ279924.1|BQ279924
EST:     CGATGACAGCCAGTTCTTCGCTGGCTCCAACAGGCCGTCCAAATTCATCT                         AGAGGAAGCAGTCAAGCTTCTGAAACTCCAATCATAGCTAATGATGAAGAT
genomic: CGATGACAGCCAGTTCTTCGCTGGCTCCTACAGGCCGTCCAAATTCATCTgtatgtctaa ... tcttctgcagAGAGGAAGCAGTCAAGCTTCTGAAACTCCAATCATAGCTAATGATGAAGAT