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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGCCAAGTTCTGGAATGAGTTTGGCAAATCAATCAAGCTGGGTATCATTGAAGACGCAACTAACAGGAACCGCCTTGCGAAGCTTCTTAGATTTGAAAGgtttgtcctttcctactattttccaaacgctgtagctttaattgtatgtaccgggctgggaaaaaaaaagctgatctgatatttgcttgcctcag

Basic information

species Zea mays
transcript GRMZM2G399073_T03
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G399073_T02 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os06g50300.1 (Oryza sativa), 5'ss of exon 12
ACGCCAAGTTCTGGAATGAGTTTGGCAAATCAATCAAGCTGGGTATCATTGAAGACGCAACTAACAGGAACCGCCTTGCGAAGCTTCTTAGATTTGAAAGgtttgtcctttcctactattttccaaacgctgtagctttaattgtatgtaccgggctgggaaaaaaaaagctgatctgatatttgcttgcctcag
| ||||||||||||||||||||||| |||||| ||||| |||| ||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||| | |  | ||| | ||||     ||   || || || ||| |     ||  || | || | | ||||  |    |||   ||  ||||
ATGCCAAGTTCTGGAATGAGTTTGGAAAATCAGTCAAGTTGGGCATCATTGAAGACGCAACTAACAGGAACCGTCTTGCAAAGCTTCTGAGATTTGAAAGgtttgtcttctatt-ctaatgtccactaattg---ctgtagttatatat-----gcgagggataatagaactgagtt----tttatctgtttcag

upper sequence: GRMZM2G399073_T02 (Zea mays), 5'ss of exon 14
lower sequence: GLYMA17G37820.1 (Glycine max), 5'ss of exon 12
-ACGCCAAGTTCTGGAATGAGTTTGGCAAATCAATCAAGCTGGGTATCATTGAAGACGCAACTAACAGGAACCGCCTTGCGAAGCTTCTTAGATTTGAAAGgtttgtcctttcctactattttccaaacgctgtagctttaattgtatgtaccgggctgggaaaaaaaa-agctgatctgatatttgcttgcctcag-
 |  |||||||||||||||||||||| ||||| || || || |||||||| || || || || ||||| || ||  | || || || || |||||||| |||| | |   ||| |  | |  |    |  || | |   || |  ||| | |     |     |   || |  | | |||||| |||     ||    
TATTCCAAGTTCTGGAATGAGTTTGGTAAATCCATTAAACTTGGTATCATCGAGGATGCCACCAACAGAAATCGTTTGGCAAAACTGCTCAGATTTGAGAggtatattacttcttcatgtaattattaaactcttgtggtagtgttatttcctcacttccattagttaacaatttagctgatacttggaactcttgca

upper sequence: GRMZM2G399073_T02 (Zea mays), 5'ss of exon 14
lower sequence: AT4G24190.1 (Arabidopsis thaliana), 5'ss of exon 12
ACGCCAAGTTCTGGAATGAGTTTGGCAAATCAATCAAGCTGGGTATCATTGAAGACGCAACTAACAGGAACCGCCTTGCGAAGCTTCTTAGATTTGAAAGgtttgtcctttcctactattttccaaacgctgtagctttaattgtatgtaccgggctgggaaaaaaaaagctgatctgatatttgcttgcctcag
|| | || |||||||| ||||||||||| ||  |||| || ||||||||||| || ||  |||||||||||||| | || || |||||| | ||||| | ||  |  || |     | ||||  | || | ||   |  | |  |  | ||| |    ||  |||       ||| || |||||   |   ||||
ACACAAAATTCTGGAACGAGTTTGGCAAGTCTGTCAAACTAGGTATCATTGAGGATGCTGCTAACAGGAACCGCTTGGCAAAACTTCTTCGTTTTGAGACgtaagctctgttactttttttttaatacac-gtctgtccattcattagcaccag--caggctaaa-------gatttg-tattttgctatttcag

upper sequence: GRMZM2G399073_T02 (Zea mays), 5'ss of exon 14
lower sequence: Vv18s0001g14500.t01 (Vitis vinifera), 5'ss of exon 12
ACGCCAAGTTCTGGAATGAGTTTGGCAAATCAATCAAGCTGGGTATCATTGAAGACGCAACTAACAGGAACCGCCTTGCGAAGCTTCTTAGATTTGAAAGgtttgtcctttcctactattttccaaacgctgt---agcttt--aattgt------atgtaccgggctgggaaaaaaaaagctg-atctgatattt-gct-tgcctcag---
| || ||||||||||||||||||||||| || || || || ||||| |||||||| ||| | ||||| |||||| | || |||||||| |||||||||||||   |  |||  |   |||   || |  ||||   || |||  |  |||      ||  ||  |  |       ||   |||  || || ||||| ||| |   |      
ATGCAAAGTTCTGGAATGAGTTTGGCAAGTCCATAAAACTTGGTATTATTGAAGATGCATCCAACAGAAACCGCTTGGCCAAGCTTCTCAGATTTGAAAGgtactttttttttttgcattcagcatattctgttttagttttctagctgttctttgattcacttgcatctccctgaacgtgctttatttggtattttgctctatttttacag

upper sequence: GRMZM2G399073_T02 (Zea mays), 5'ss of exon 14
lower sequence: EFJ17496 (Selaginella moellendorffii), 5'ss of exon 13
ACGCCAAGTTCTGGAATGAGTTTGGCAAATCAATCAAGCTGGGTATCATTGAAGACGCAACTAACAGGAACCGCCTTGCGAAGCTTCTTAGATTTGAAAGgtttgtcctttcctactattttccaaacgctgtagctttaattgtatgtaccgggctgggaaaaaaaaagctgatctgatatttgcttgcctcag
||| |||||||||||| ||||| ||||| || || || || || ||| |||||||||||||||||||    || |||||||| || ||  ||||  | ||||  |    |    |  |||        |  | |||| | ||||| | | |     |   | |                                
ACGTCAAGTTCTGGAACGAGTTCGGCAAGTCGATTAAACTTGGCATCGTTGAAGACGCAACTAACAGAGTGCGTCTTGCGAAACTCCTGCGATTCTACAGgtaagatagtcaagaaaatt--------gtagcagctctgattgt-tattctaaattctcacag-------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31358114|gb|CD442471.1|CD442471
EST:     GAAGACGCAACTAACAGGAACCGCCTTGCGAAGCTTCTTAGATTTGAAAG                         TACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATTTCAAGGA
genomic: GAAGACGCAACTAACAGGAACCGCCTTGCGAAGCTTCTTAGATTTGAAAGgtttgtcctt ... cttgcctcagTACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATTTCAAGGA
EST: gi|67024101|gb|CO452850.1|CO452850
EST:     GAAGACGCAACTAACAGGAACCGCCTTGCGAAGCTTCTTAGATTTGAAAG                         TACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATTTCAAGGAT
genomic: GAAGACGCAACTAACAGGAACCGCCTTGCGAAGCTTCTTAGATTTGAAAGgtttgtcctt ... cttgcctcagTACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATTTCAAGGAT
EST: gi|211354990|gb|FL245115.1|FL245115
EST:     GAAGACGCAACTAACAGGAACCGCCTTGCGAAGCTTCTTAGATTTGAAAG                         TACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATTTCAAGGAT
genomic: GAAGACGCAACTAACAGGAACCGCCTTGCGAAGCTTCTTAGATTTGAAAGgtttgtcctt ... cttgcctcagTACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATTTCAAGGAT