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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGATGATGTCATTGATCTTGTCATTCCAAGAGGCAGCAATAAGCTGGTTTCGCAAATCAAAGCATCAACTAAGATACCTGTCCTCGGTCATGCGGgtaaatttatcttccaatagtttgtttttggtacaaacagtccactacaatactaaaatatacggactggtttgatttctgaattttttctctatag

Basic information

species Zea mays
transcript GRMZM2G375504_T03
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G375504_T03 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os05g38150.1 (Oryza sativa), 5'ss of exon 12
CTTGATGATGTCATTGATCTTGTCATTCCAAGAGGCAGCAATAAGCTGGTTTCGCAAATCAAAGCATCAACTAAGATACCTGTCCTCGGTCATGCGGgtaaatttatcttccaatagtttgtttttggtacaaacagtccactacaatactaaaatatacggactggtt-tgatttctgaattt-----tttctctatag---
||||||||||||||||||||||||||||||||||| || |||||||| || || |||||||| || ||||||||||| ||||| || || ||||| ||||||||    ||  | |    |  ||      |  |  |     |   ||  | |  | |     ||  ||   ||||||||  ||     |||| | |  |   
CTTGATGATGTCATTGATCTTGTCATTCCAAGAGGAAGTAATAAGCTTGTCTCTCAAATCAAGGCGTCAACTAAGATTCCTGTTCTTGGGCATGCTGgtaaattctgtttgaacttaagttcttaccactcttatggctttattggatgttgagtttttttttctttttgctatttctgacattccatatttccccactgcag

upper sequence: GRMZM2G375504_T03 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA14G07120.1 (Glycine max), 5'ss of exon 10
CTTGATGATGTCATTGATCTTGTCATTCCAAGAGGCAGCAATAAGCTGGTTTCGCAAATCAAAGCATCAACTAAGATACCTGTCCTCGGTCATGCGGgtaaatttatctt-ccaatagtttgtttttggtacaaacagtccactacaatactaaaatatacggactggttt-gatttctgaattttttctctatag----
|| ||||| || |||||||| || ||||||||||||||||| || || ||||| ||||||||    || ||||| || |||||  | ||||| || |||||   |||  | |  ||  ||   | | || | |||   |  |||  | |  |||  |  || |  || ||| |||| || || ||||| || |       
CTGGATGACGTAATTGATCTGGTGATTCCAAGAGGCAGCAACAAACTTGTTTCTCAAATCAAGAGTTCCACTAAAATTCCTGTTTTAGGTCACGCTGgtaagactattatgcttatgtttaaatataggcataaatt-tttactctatt--taatttggactgtgtgattttgattcctcaagtttttttcaagtcaatt

upper sequence: GRMZM2G375504_T03 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA03G12240.1 (Glycine max), 5'ss of exon 13
CTTGATGATGTCATTGATCTTGTCATTCCAAGAGGCAGCAATAAGCTGGTTTCGCAAATCAAAGCATCAACTAAGATACCTGTCCTCGGTCATGCGGgtaaatttatcttcca-atagtttgtttttggtacaaacagtccactacaatactaaaatatacggactggtttgatttctgaattttttctctatag
||||||||||| || ||||| ||  | || |||||||| |||||||| ||||| |||||||| | |||||| || || ||||| || |||||||| |||||  || ||||||| |||  ||   | |  |  |   |||  |   |    ||      |    ||||  ||  ||     ||||||  | |  ||
CTTGATGATGTAATAGATCTAGTGGTCCCTAGAGGCAGTAATAAGCTTGTTTCTCAAATCAAGGAATCAACAAAAATTCCTGTTCTTGGTCATGCTGgtaa--ttttcttccatataaatttcctattttgtagttagtaaatagcctctctt-----tttttactgaatttgtt-----atttttgttatgcag

upper sequence: GRMZM2G375504_T03 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA01G24530.1 (Glycine max), 5'ss of exon 14
CTTGATGATGTCATTGATCTTGTCATTCCAAGAGGCAGCAATAAGCTGGTTTCGCAAATCAAAGCATCAACTAAGATACCTGTCCTCGGTCATGCGGgtaaatttatcttcca-atagtttgtttttggtacaaacagtccactacaatactaaaatatacggactggtttgatttctgaattttttctctatag
||||||||||| || ||||| ||  | || |||||||| |||||||| ||||| |||||||| | |||||| || || ||||| || |||||||| |||||  ||  |||||| |||  ||   | |  |  |   |||  |     |  ||  | | |  | | | ||||  ||  | |               
CTTGATGATGTAATAGATCTAGTGGTCCCTAGAGGCAGTAATAAGCTTGTTTCTCAAATCAAGGAATCAACAAAAATTCCTGTTCTTGGTCATGCTGgtaatgtt--cttccatataaatttcatattttgtagttagtatat----aggctttattttttgaatttgtttttttcattatgcag----------

upper sequence: GRMZM2G375504_T03 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA18G03830.1 (Glycine max), 5'ss of exon 13
CTTGATGATGTCATTGATCTTGTCATTCCAAGAGGCAGCAATAAGCTGGTTTCGCAAATCAAAGCATCAACTAAGATACCTGTCCTCGGTCATGCGGgtaa-atttatcttccaatagtttg-----tttttggtacaa-acagtccactacaatactaaaatatacggactggtttgatttctgaattttttctctatag
 | |||||||| |||||||| || ||||||||||||||||| || || ||  | || |||||    || ||||| || |||||||| |||||||| ||||| |  | ||| |  |   |        |  ||  |   | |  ||  |      |   |||| | |    |       |   |  | | || ||     ||
TTGGATGATGTAATTGATCTAGTGATTCCAAGAGGCAGCAACAAACTTGTCACTCAGATCAAGAGTTCCACTAAAATTCCTGTCCTGGGTCATGCAGgtaagacctttctgcttaacatgcaagaaatgcttaatgtgatatggtaaatccttttgtcaaaaga-atttgccataacaaggccacattattgtccaaccag

upper sequence: GRMZM2G375504_T03 (Zea mays), 5'ss of exon 12
lower sequence: AT3G55610.2 (Arabidopsis thaliana), 5'ss of exon 13
CTTGATGATGTCATTGATCTTGTCATTCCAAGAGGCAGCAATAAGCTGGTTTCGCAAATCAAAGCATCAACTAAGATACCTGTCCTCGGTCATGCGGgtaaatttatcttccaatagtttgtttttggtacaaacagtccactacaatactaaaatatacggactggtttgatttctgaattttttctctatag
|||||||| || ||||||||||| || |||||||||||||| ||||| ||||| ||||| |||   || || || || || || || || ||||| ||||  |||||        ||||   ||    ||  |    |  | |   ||      | | |     ||| ||  ||| ||  | ||| |       
CTTGATGACGTTATTGATCTTGTGATCCCAAGAGGCAGCAACAAGCTTGTTTCTCAAATAAAAAACTCGACGAAAATCCCAGTGCTAGGCCATGCTGgtatgtttata-------agttcagttccatta--agttcttaagttggattggcctagagagaacatggcttattttttgggtgtttccag-----

upper sequence: GRMZM2G375504_T03 (Zea mays), 5'ss of exon 12
lower sequence: Vv08s0007g01060.t01 (Vitis vinifera), 5'ss of exon 13
CTTGATGATGTCATTGATCTTGTCATTCCAAGAGGCAGCAATAAGCTGGTTTCGCAAATCAAAGCATCAACTAAGATACCTGTCCTCGGTCATGCGGgtaaatttatcttccaatagtttgtttttggtacaaacagtccactacaatactaaaatatacggactggtttgatttctgaattttttctctatag
|||||||||||||| |||||||| || || ||||||||||| || || ||||| |||||||| |  |||||||| || ||||| || |||||||| |||||  | |  |   | |  ||   |||    | || | |   ||||  |   |  | ||||  |  || ||| |                      
CTTGATGATGTCATAGATCTTGTGATCCCTAGAGGCAGCAACAAACTCGTTTCTCAAATCAAGGATTCAACTAAAATCCCTGTTCTTGGTCATGCTGgtaagataaattgtgactctttaaattt----ataatctgcaaacta-gaggttttattatagtgtttgctttcag---------------------

upper sequence: GRMZM2G375504_T03 (Zea mays), 5'ss of exon 12
lower sequence: Vv13s0019g02360.t01 (Vitis vinifera), 5'ss of exon 13
CTTGATGATGTCATTGATCTTGTCATTCCAAGAGGCAGCAATAAGCTGGTTTCGCAAATCAAAGCATCAACTAAGATACCTGTCCTCGGTCATGCGGgtaaatttatcttccaatagtttgtttttggtacaaacagtccactacaatactaa-aatatacggactggtttgatttctgaattttttctctatag-------------------------------------------------
||||||||||| || || ||||| || ||||||||||||||||| || ||||| ||||| || |  ||||| || || ||||| || || ||||| ||||   | |    | ||        ||  | | | |    |  | || ||||  || | |||| |        || |     |||||| | | ||| |                                                 
CTTGATGATGTGATCGACCTTGTAATCCCAAGAGGCAGCAATAAACTTGTTTCTCAAATAAAGGATTCAACAAAAATTCCTGTTCTGGGCCATGCTGgtatgatgacagactaa------acttaagatgctatttattta-tataatatcaacagtatatgc-tcaacctggtcaaacaattttctttttatgggaagaacaatgtctgcatttagaattaaagatacagcatttgctctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19436126|gb|BM952536.1|BM952536
EST:     GGTTTCGCAAATCAAGGCATCGACTAAGATACCTGTCCTCGGTCATGCGG                         ATGGTATTTGTCATGTATACATTGACAAATCAGCTGACATGAATATGGCAA
genomic: GGTTTCGCAAATCAAAGCATCAACTAAGATACCTGTCCTCGGTCATGCGGgtaaatttat ... ttctctatagATGGTATTTGTCATGTATACATTGACAAATCAGCTGACATGAATATGGCAA
EST: gi|60348148|gb|DN215121.1|DN215121
EST:     GGTTTCGCAAATCAAAGCATCAACTAAGATACCTGTCCTCGGTCATGCGG                         ATGGTATTTGTCATGTATACATTGACAAATCAGCTGACATGAATATGGCAA
genomic: GGTTTCGCAAATCAAAGCATCAACTAAGATACCTGTCCTCGGTCATGCGGgtaaatttat ... ttctctatagATGGTATTTGTCATGTATACATTGACAAATCAGCTGACATGAATATGGCAA
EST: gi|32934077|gb|CF038889.1|CF038889
EST:     GGTTTCGCAAATCAAAGCATCAACTAAGATACCTGTCCTCGGTCATGCGG                         ATGGTATTTGTCATGTATACATTGACAAATCAGCTGACATGAATATGGCAA
genomic: GGTTTCGCAAATCAAAGCATCAACTAAGATACCTGTCCTCGGTCATGCGGgtaaatttat ... ttctctatagATGGTATTTGTCATGTATACATTGACAAATCAGCTGACATGAATATGGCAA
EST: gi|87154005|gb|DY398794.1|DY398794
EST:     GGTTTCGCAAATCAAGGCATCGACTAAGATACCTGTCCTCGGTCATGCGG                         ATGGTATTTGTCATGTATACATTGACAAATCAGCTGACATGAATATGGCAA
genomic: GGTTTCGCAAATCAAAGCATCAACTAAGATACCTGTCCTCGGTCATGCGGgtaaatttat ... ttctctatagATGGTATTTGTCATGTATACATTGACAAATCAGCTGACATGAATATGGCAA
EST: gi|32933434|gb|CF038246.1|CF038246
EST:     GGTTTCGCAAATCAAAGCATCAACTAAGATACCTGTCCTCGGTCATGCGG                         ATGGTATTTGTCATGTATACATTGACAAATCAGCTGACATGAATATGGCAA
genomic: GGTTTCGCAAATCAAAGCATCAACTAAGATACCTGTCCTCGGTCATGCGGgtaaatttat ... ttctctatagATGGTATTTGTCATGTATACATTGACAAATCAGCTGACATGAATATGGCAA
EST: gi|32934404|gb|CF039216.1|CF039216
EST:     GGTTTCGCAAATCAAAGCATCAACTAAGATACCTGTCCTCGGTCATGCGG                         ATGGTATTTGTCATGTATACATTGACAAATCAGCTGACATGAATATGGCAA
genomic: GGTTTCGCAAATCAAAGCATCAACTAAGATACCTGTCCTCGGTCATGCGGgtaaatttat ... ttctctatagATGGTATTTGTCATGTATACATTGACAAATCAGCTGACATGAATATGGCAA
EST: gi|22491554|gb|BU051477.1|BU051477
EST:     TCGGTCATGCGG                         ATGGTATTTGTCATGTATACATTGACAAATCAGCTGACATGAATATGGCAA
genomic: TCGGTCATGCGGgtaaatttat ... ttctctatagATGGTATTTGTCATGTATACATTGACAAATCAGCTGACATGAATATGGCAA
EST: gi|67032674|gb|CO461423.1|CO461423
EST:     TTTCGNCAA-TCAAAGCATNCA-CTANGATACCTGTCCTCGGTCATGCGG                         ATGGTATT-GTCATGTATACATTGACA
genomic: TTTCG-CAAATCAAAGCAT-CAACTAAGATACCTGTCCTCGGTCATGCGGgtaaatttat ... ttctctatagATGGTATTTGTCATGTATACATTGACA
EST: gi|78024065|gb|DV492452.1|DV492452
EST:     GGTTTCGCAAATCAAAGCATCAACTAAGATACCTGTCCTCGGTCATGCGG                         ATGGTATTTGTCATGTATACATTGACAAATCAGCTGACATGAATATGGCAA
genomic: GGTTTCGCAAATCAAAGCATCAACTAAGATACCTGTCCTCGGTCATGCGGgtaaatttat ... ttctctatagATGGTATTTGTCATGTATACATTGACAAATCAGCTGACATGAATATGGCAA
EST: gi|6021994|gb|AW066922.1|AW066922
EST:     GGTTTCGCAAATCAAAGCATCAACTAAGATACCTGTCCTCGGTCATGCGG                         ATGGTATTTGTCATGTATACATTGACAAATCAGCTGACATGAATATGGCAA
genomic: GGTTTCGCAAATCAAAGCATCAACTAAGATACCTGTCCTCGGTCATGCGGgtaaatttat ... ttctctatagATGGTATTTGTCATGTATACATTGACAAATCAGCTGACATGAATATGGCAA