1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
AGAATGCAAAGATGTCAAGATCGACCGAGTCTATATTGGTTCCTGCACTGGTGGCAAGACTGAGGACTTCCTTGCTGCCGCAAAGGTGTTCTTAGCCTCGgtgagaatcttgaatcctgtcacggtgcacggacttgttacctttcagacctatcccatggccacttgacttactggaaccttgtttcttaatccag
species | Zea mays |
transcript | GRMZM2G370852_T03 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CGCAAAGGTGTTCTTAGCCTCG GGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAGEST: gi|37375881|gb|CF624420.1|CF624420
genomic: CGCAAAGGTGTTCTTAGCCTCGgtgagaatct ... cttaatccagGGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAG
EST: CCGCAAAGGTGTTCTAAGCTTCG GGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAGEST: gi|76282892|gb|DV022460.1|DV022460
genomic: CCGCAAAGGTGTTCTTAGCCTCGgtgagaatct ... cttaatccagGGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAG
EST: GTGGCAAGACTGAGGACTTCCTTGCTGCCGCAAAGGTGTTCTTAGCCTCG GGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAGEST: gi|24765664|gb|CA400823.1|CA400823
genomic: GTGGCAAGACTGAGGACTTCCTTGCTGCCGCAAAGGTGTTCTTAGCCTCGgtgagaatct ... cttaatccagGGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAG
EST: CCGCAAAGGTGTTCTTAGCCTCG GGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTACCACACAAAAGEST: gi|76924561|gb|DV170009.1|DV170009
genomic: CCGCAAAGGTGTTCTTAGCCTCGgtgagaatct ... cttaatccagGGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAG
EST: GGGGCAAGACTGAGGACTTCCTTGCTGCCGCAAAGGTGTTCTTAGCCTCG GGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAGEST: gi|101395254|gb|EB819557.1|EB819557
genomic: GTGGCAAGACTGAGGACTTCCTTGCTGCCGCAAAGGTGTTCTTAGCCTCGgtgagaatct ... cttaatccagGGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAG
EST: CCGCAAAGGGTGTTTTTACCCTCG GGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAGEST: gi|16916456|gb|BM072849.1|BM072849
genomic: CCGCAAA-GGTGTTCTTAGCCTCGgtgagaatct ... cttaatccagGGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAG
EST: GTGGCAAGACTGAGGACTTCCTTGCTGCCGCAAAGGTGTTCTTAGCCTCG GGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAGEST: gi|31350830|gb|CD435187.1|CD435187
genomic: GTGGCAAGACTGAGGACTTCCTTGCTGCCGCAAAGGTGTTCTTAGCCTCGgtgagaatct ... cttaatccagGGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAG
EST: GTGGCAAGACTGAGGACTTCCTTGCTGCCGCAAAGGTGTTCTTAGCCTCG GGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAGEST: gi|60341015|gb|DN207988.1|DN207988
genomic: GTGGCAAGACTGAGGACTTCCTTGCTGCCGCAAAGGTGTTCTTAGCCTCGgtgagaatct ... cttaatccagGGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAG
EST: GTGGCAAGACTGAGGACTTCCTTGCTGCCGCAAAGGTGTTCTTAGCCTCG GGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAGEST: gi|32840107|gb|CD979788.1|CD979788
genomic: GTGGCAAGACTGAGGACTTCCTTGCTGCCGCAAAGGTGTTCTTAGCCTCGgtgagaatct ... cttaatccagGGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAG
EST: GTGGCAAGACTGAGGACTTCCTTGCTGCCGCAAAGGTGTTCTTAGCCTCG GGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAGEST: gi|211090106|gb|FL396339.1|FL396339
genomic: GTGGCAAGACTGAGGACTTCCTTGCTGCCGCAAAGGTGTTCTTAGCCTCGgtgagaatct ... cttaatccagGGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAG
EST: GTGGCAAGACTGAGGACTTCCTTGCTGCCGCAAAGGTGTTCTTAGCCTCG GGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAGEST: gi|71763036|gb|DR960973.1|DR960973
genomic: GTGGCAAGACTGAGGACTTCCTTGCTGCCGCAAAGGTGTTCTTAGCCTCGgtgagaatct ... cttaatccagGGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAG
EST: GTGGCAAGACTGAGGACTTCCTTGCTGCCGCAAAGGTGTTCTTAGCCTCG GGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAGEST: gi|32840106|gb|CD979787.1|CD979787
genomic: GTGGCAAGACTGAGGACTTCCTTGCTGCCGCAAAGGTGTTCTTAGCCTCGgtgagaatct ... cttaatccagGGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAG
EST: GTGGCAAGACTGAGGACTTCCTTG-TGCCGCAAAGGTGTTCTTAGCCTCG GGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAGEST: gi|211011802|gb|FL408548.1|FL408548
genomic: GTGGCAAGACTGAGGACTTCCTTGCTGCCGCAAAGGTGTTCTTAGCCTCGgtgagaatct ... cttaatccagGGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAG
EST: GTGGCAAGACTGAGGACTTCCTTGCTGCCGCAAAGGTGTTCTTAGCCTCG GGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAGEST: gi|149080159|gb|EE169177.2|EE169177
genomic: GTGGCAAGACTGAGGACTTCCTTGCTGCCGCAAAGGTGTTCTTAGCCTCGgtgagaatct ... cttaatccagGGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAG
EST: CAAAGGTGTTCTTAGCCTCG GGAAAGAAGGTTAAAGTTCCCACATTCTTTGTCCCTGCCACACAAAAGEST: gi|211350370|gb|FL368852.1|FL368852
genomic: CAAAGGTGTTCTTAGCCTCGgtgagaatct ... cttaatccagGGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAG
EST: GTGGCAAGACTGAGGACTTCCTTGCTGCCGCAAAGGTGTTCTTAGCCTCG GGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAGEST: gi|148971978|gb|EE022780.2|EE022780
genomic: GTGGCAAGACTGAGGACTTCCTTGCTGCCGCAAAGGTGTTCTTAGCCTCGgtgagaatct ... cttaatccagGGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAG
EST: GTGGCAAGACTGAGGACTTCCTTGCTGCCGCAAAGGTGTTCTTAGCCTCG GGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAGEST: gi|74246484|gb|DT654398.1|DT654398
genomic: GTGGCAAGACTGAGGACTTCCTTGCTGCCGCAAAGGTGTTCTTAGCCTCGgtgagaatct ... cttaatccagGGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAG
EST: GTGGCAAGACTGAGGACTTCCTTGCTGCCGCAAAGGTGTTCTTAGCCTCG GGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAGEST: gi|149079940|gb|EE168953.2|EE168953
genomic: GTGGCAAGACTGAGGACTTCCTTGCTGCCGCAAAGGTGTTCTTAGCCTCGgtgagaatct ... cttaatccagGGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAG
EST: GTGGCAAGACTGAGGACTTCCTTGCTGCCGCAAAGGTGTTCTTAGCCTCG GGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAGEST: gi|211524232|gb|FL397627.1|FL397627
genomic: GTGGCAAGACTGAGGACTTCCTTGCTGCCGCAAAGGTGTTCTTAGCCTCGgtgagaatct ... cttaatccagGGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAG
EST: GTGGCAAGACTGAGGACTTCCTTGCTGCCGCAAAGGTGTTCTTAACCTCG GGAAAAAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCCCACAAAAGGEST: gi|37418663|gb|CF647003.1|CF647003
genomic: GTGGCAAGACTGAGGACTTCCTTGCTGCCGCAAAGGTGTTCTTAGCCTCGgtgagaatct ... cttaatccagGGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAGG
EST: GTGGCAAGACTGAGGACTTCCTTGCTGCCGCAAAGGTGTTCTTAGCCTCG GGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAG
genomic: GTGGCAAGACTGAGGACTTCCTTGCTGCCGCAAAGGTGTTCTTAGCCTCGgtgagaatct ... cttaatccagGGAAAGAAGGTTAAAGTTCCCACATTCCTTGTCCCTGCCACACAAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAATGCAAAGATGTCAAGATCGACCGAGTCTATATTGGTTCCTGCACTGGTGGCAAGACTGAGGACTTCCTTGCTGCCGCAAAGGTGTTCTTAGCCTCGgtgagaatcttgaatcctgtcacggtgcacggacttgttacctttcagacctatcccatggccacttgacttactggaaccttgtttcttaatccag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG