1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
AGTTGGCATGACTCCTGAGGAAGTAGTATCGAAAATAATGGCAAACCCAGATGTAGCTGTTGCATTCCAGAATCCAAAAATACAGACAGCCATCATGGACgtaagaccatgtataaactcatctattactgcttagctttctgacatttgagtcttctgacatggtgccatcttgatgcag
species | Zea mays |
transcript | GRMZM2G353213_T01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: ATGTAGCTGTTGCATTCCAGAATCCAAAAATACAGACAGCCATCATGGAC TGTTCGCAGAACCCTCTTAACATTGTAAAATACCAAAATGACAAGGAGEST: gi|211507478|gb|FL432462.1|FL432462
genomic: ATGTAGCTGTTGCATTCCAGAATCCAAAAATACAGACAGCCATCATGGACgtaagaccat ... cttgatgcagTGCTCGCAGAACCCTCTTAACATTGTAAAATACCAAAATGACAAGGAG
EST: ATGTAGCTGTTGCATTCCAGAATCCAAAAATACAGACAGCCATCATGGAC TGCTCGCAGAACCCTCTTAACATTGTAAAATACCAAAATGACAAGGAGEST: gi|18172822|gb|BM348210.1|BM348210
genomic: ATGTAGCTGTTGCATTCCAGAATCCAAAAATACAGACAGCCATCATGGACgtaagaccat ... cttgatgcagTGCTCGCAGAACCCTCTTAACATTGTAAAATACCAAAATGACAAGGAG
EST: ATGTAGCTGTTGCATTCCAGAATCCAAAAATACAGACAGCCATCATGGAC TGCTCGCAGAACCCTCTTAACATTGTAAAATACCAAAATGACAAGGAGEST: gi|211025065|gb|FL063413.1|FL063413
genomic: ATGTAGCTGTTGCATTCCAGAATCCAAAAATACAGACAGCCATCATGGACgtaagaccat ... cttgatgcagTGCTCGCAGAACCCTCTTAACATTGTAAAATACCAAAATGACAAGGAG
EST: ATGTAGCTGTTGCATTCCAGAATCCAAAAATACAGACAGCCATCATGGAC TGCTCGCAGAACCCTCTTAACATTGTAAAATACCAAAATGACAAGGAG
genomic: ATGTAGCTGTTGCATTCCAGAATCCAAAAATACAGACAGCCATCATGGACgtaagaccat ... cttgatgcagTGCTCGCAGAACCCTCTTAACATTGTAAAATACCAAAATGACAAGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTGGCATGACTCCTGAGGAAGTAGTATCGAAAATAATGGCAAACCCAGATGTAGCTGTTGCATTCCAGAATCCAAAAATACAGACAGCCATCATGGACgtaagaccatgtataaactcatctattactgcttagctttctgacatttgagtcttctgacatggtgccatcttgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA