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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTCAGCCATCAATTGTATCTCATCCCTCCTTCTGGGAAAGAATTGGTAGCGACACATTAGCTACCGACATGCTATTCTTTGCGTTCTATTACCAGCAGgtcaattttttttaatctttccaatttatatttgtttcctccactacccacgaattttcaccagtccttagtttttactcataataatgttctgttgcag

Basic information

species Zea mays
transcript GRMZM2G340749_T01
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211026661|gb|FL472268.1|FL472268
EST:     GCGACACATTAGCTACCGACATGCTATTCTTTGCGTTCTATTACCAGCAG                         AACACATATCAACAATACATGGCTGCTAGAGAATTGAAGAAGCAATCGTGG
genomic: GCGACACATTAGCTACCGACATGCTATTCTTTGCGTTCTATTACCAGCAGgtcaattttt ... tctgttgcagAACACATATCAACAATACATGGCTGCTAGAGAATTGAAGAAGCAATCGTGG
EST: gi|50331351|gb|CO526477.1|CO526477
EST:     GCGACACATTAGCTACCGACATGCTATTCTTTGCGTTCTATTACCAGCAG                         AACACATATCAACAATACATGGCTGCTAGAGAATTGAAGAAGCAATCGTGG
genomic: GCGACACATTAGCTACCGACATGCTATTCTTTGCGTTCTATTACCAGCAGgtcaattttt ... tctgttgcagAACACATATCAACAATACATGGCTGCTAGAGAATTGAAGAAGCAATCGTGG
EST: gi|67024274|gb|CO453023.1|CO453023
EST:     GCGACACATTAGCTACCGACATGCTATTCTTTGCGTTCTATTACCAGCAG                         AACACATATCAACAATACATGGCTGCTAGAGAATTGAAGAAGCAATCGTGG
genomic: GCGACACATTAGCTACCGACATGCTATTCTTTGCGTTCTATTACCAGCAGgtcaattttt ... tctgttgcagAACACATATCAACAATACATGGCTGCTAGAGAATTGAAGAAGCAATCGTGG
EST: gi|31359147|gb|CD443504.1|CD443504
EST:     GCGACACATTAGCTACCGACATGCTATTCTTTGCGTTCTATTACCAGCAG                         AACACATATCAACAATACATGGCTGCTAGAGAATTGAAGAAGCAATCGTGG
genomic: GCGACACATTAGCTACCGACATGCTATTCTTTGCGTTCTATTACCAGCAGgtcaattttt ... tctgttgcagAACACATATCAACAATACATGGCTGCTAGAGAATTGAAGAAGCAATCGTGG