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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTGTTACAGTACATGTGACTCAGAAGTATTTTGTGAGTGCTTCCAAGGATAACTCTTGGTGCTTCTATGATATTTCAACAGGATCTTGCCTGACACAGgttacctccctcacacacatgcacacatatttttactacatttgagtatgcatatcattgtgcatgattatttttatcag

Basic information

species Zea mays
transcript GRMZM2G324540_T01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G324540_T01 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os10g32880.1 (Oryza sativa), 5'ss of exon 10
AGCTGTTACAGTACATGTGACTCAGAAGTATTTTGTGAGTGCTTCCAAGGATAACTCTTGGTGCTTCTATGATATTTCAACAGGATCTTGCCTGACACAGgttacctccctcac---acacatgcacacatatttttactacatttgagtatgcatat-cattgtgcatgattatttttatcag-----------------------------------
|||||||||||| |||| |||||||||||| ||||||| |||||||||||||||  ||||||||||||| |||||| || ||||||||||||| |||||||||  |||| | |     | |||| | || |  |   | | |||    |||   |||     | ||  || |   |   |  |                                    
AGCTGTTACAGTCCATGCGACTCAGAAGTACTTTGTGACTGCTTCCAAGGATAATACTTGGTGCTTCTACGATATTCCATCAGGATCTTGCCTCACACAGgtttactccattatctttctcatgta-acctgctcccatt-catccatgtacttatacatgctttgtctgttagctcccaagatgtttatgagttaatgaataccttttctttactcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33096397|gb|CF056391.1|CF056391
EST:     ATAACTCTTGGTGCTTCTATGATATTTCAACAGGATCTTGCCTGACACAG                         GTTGGCGATGCTTCAGGACAGGAGGGATATACATCTGCGTCTTTCCATCCA
genomic: ATAACTCTTGGTGCTTCTATGATATTTCAACAGGATCTTGCCTGACACAGgttacctccc ... tttttatcagGTTGGCGATGCTTCAGGACAAGAGGGATATACATCTGCGTCTTTCCATCCA
EST: gi|60400048|gb|DN232855.1|DN232855
EST:     ATAACTCTTGGTGCTTCTATGATATTTCAACAGGATCTTGCCTGACACAG                         GTTGGCGATGCTTCAGGACAAGAGGGATATACATCTGCGTCTTTCCATCCA
genomic: ATAACTCTTGGTGCTTCTATGATATTTCAACAGGATCTTGCCTGACACAGgttacctccc ... tttttatcagGTTGGCGATGCTTCAGGACAAGAGGGATATACATCTGCGTCTTTCCATCCA
EST: gi|60337485|gb|DN204458.1|DN204458
EST:     ATAACTCTTGGTGCTTCTATGATATTTCAACAGGATCTTGCCTGACACAG                         GTTGGCGATGCTTCAGGACAAGAGGGATATACATCTGCGTCTTTCCATCCA
genomic: ATAACTCTTGGTGCTTCTATGATATTTCAACAGGATCTTGCCTGACACAGgttacctccc ... tttttatcagGTTGGCGATGCTTCAGGACAAGAGGGATATACATCTGCGTCTTTCCATCCA
EST: gi|32931746|gb|CF036558.1|CF036558
EST:     ATAACTCTTGGTGCTTCTATGATATTTCAACAGGATCTTGCCTGACACAG                         GTTGGCGATGCTTCAGGACAAGAGGGATATACATCTGCGTCTTTCCATCCA
genomic: ATAACTCTTGGTGCTTCTATGATATTTCAACAGGATCTTGCCTGACACAGgttacctccc ... tttttatcagGTTGGCGATGCTTCAGGACAAGAGGGATATACATCTGCGTCTTTCCATCCA
EST: gi|13490541|gb|BG517305.1|BG517305
EST:     GGTGCTTCTATGATATTTCAACAGGATCTTGCCTGACACAG                         GTTGGCGATGCTTCAGGACAAGAGGGATATACATCTGCGTCTTTCCATCCA
genomic: GGTGCTTCTATGATATTTCAACAGGATCTTGCCTGACACAGgttacctccc ... tttttatcagGTTGGCGATGCTTCAGGACAAGAGGGATATACATCTGCGTCTTTCCATCCA
EST: gi|32835644|gb|CD975322.1|CD975322
EST:     ATAACTCTTGGTGCTTCTATGATATTTCAACAGGATCTTGCCTGACACAG                         GTTGGCGATGCTTCAGGACAAGAGGGATATACATCTGCGTCTTTCCATCCA
genomic: ATAACTCTTGGTGCTTCTATGATATTTCAACAGGATCTTGCCTGACACAGgttacctccc ... tttttatcagGTTGGCGATGCTTCAGGACAAGAGGGATATACATCTGCGTCTTTCCATCCA