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CATTCTGAGTTTTGCTGCTGGAGTGGAATCAAATACAAACCACCCGCTTGGAAAAGCCATCATGGAAGCTGCAGGGGCTGCCAACTGCGTCATTATGAAGgtaatcatagcagaagtgtgcaataaatgtgagcttagaatgaccttagtatgaagtaagtgggtattctgcaagttacaaaaaactgttttaagataaa...
species | Zea mays |
transcript | GRMZM2G315931_T01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GAAAAGCCATCATGGAAGCTGCAGGGGCTGCCAACTGCGTCATTATGAAG GCAAATGATGGATCCTTCATGGAAGAACCAGGATCTGGTGCTGTGGCTACCEST: gi|78104271|gb|DV522689.1|DV522689
genomic: GAAAAGCCATCATGGAAGCTGCAGGGGCTGCCAACTGCGTCATTATGAAGgtaatcatag ... gttgtcacagGCAAATGATGGATCCTTCATGGAAGAACCAGGATCTGGTGCTGTGGCTACC
EST: GAAAAGCCATCATGGAAGCTGCAGGGGCTGCCAACTGCGTCATTATGAAG GCAAATGATGGATCCTTCATGGAAGAACCAGGATCTGGTGCTGTGGCTACCEST: gi|211170367|gb|FL103276.1|FL103276
genomic: GAAAAGCCATCATGGAAGCTGCAGGGGCTGCCAACTGCGTCATTATGAAGgtaatcatag ... gttgtcacagGCAAATGATGGATCCTTCATGGAAGAACCAGGATCTGGTGCTGTGGCTACC
EST: GAAAAGCCATCATGGAAGCTGCAGGGGCTGCCAACTGCGTCATTATGAAG GCAAATGATGGATCCTTCATGGAAGAACCAGGATCTGGTGCTGTGGCTACCEST: gi|13125965|gb|BG316640.1|BG316640
genomic: GAAAAGCCATCATGGAAGCTGCAGGGGCTGCCAACTGCGTCATTATGAAGgtaatcatag ... gttgtcacagGCAAATGATGGATCCTTCATGGAAGAACCAGGATCTGGTGCTGTGGCTACC
EST: GAAAAGCCATCATGGAAGCTGCAGGGGCTGCCAACTGCGTCATTATGAAG GCAAATGATGGATCCTTCATGGAAGAACCAGGATCTGGTGCTGTGGCTACCEST: gi|32929848|gb|CF034660.1|CF034660
genomic: GAAAAGCCATCATGGAAGCTGCAGGGGCTGCCAACTGCGTCATTATGAAGgtaatcatag ... gttgtcacagGCAAATGATGGATCCTTCATGGAAGAACCAGGATCTGGTGCTGTGGCTACC
EST: AGGGGCTGCCAACTGCGTCATTATGAAG GCAAATGATGGATCCTTCATGGAAGAACCAGGATCTGGTGCTGTGGCTACCEST: gi|32929738|gb|CF034550.1|CF034550
genomic: AGGGGCTGCCAACTGCGTCATTATGAAGgtaatcatag ... gttgtcacagGCAAATGATGGATCCTTCATGGAAGAACCAGGATCTGGTGCTGTGGCTACC
EST: GCTGCCAACTGCGTCATTATGAAG GCAAATGATGGATCCTTCATGGAAGAACCAGGATCTGGTGCTGTGGCTACCEST: gi|32929733|gb|CF034545.1|CF034545
genomic: GCTGCCAACTGCGTCATTATGAAGgtaatcatag ... gttgtcacagGCAAATGATGGATCCTTCATGGAAGAACCAGGATCTGGTGCTGTGGCTACC
EST: TGCAGGGGCTGCCAACTGCGTCATTATGAAG GCAAATGATGGATCCTTCATGGAAGAACCAGGATCTGGTGCTGTGGCTACC
genomic: TGCAGGGGCTGCCAACTGCGTCATTATGAAGgtaatcatag ... gttgtcacagGCAAATGATGGATCCTTCATGGAAGAACCAGGATCTGGTGCTGTGGCTACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATTCTGAGTTTTGCTGCTGGAGTGGAATCAAATACAAACCACCCGCTTGGAAAAGCCATCATGGAAGCTGCAGGGGCTGCCAACTGCGTCATTATGAAGgtaatcatagcagaagtgtgcaataaatgtgagcttagaatgaccttagtatgaagtaagtgggtattctgcaagttacaaaaaactgttttaagataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaaaaaa