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AGTTGAAGAAACACCCAGACCTCTGAAGGATGTCATACTTCTTTCATACGAGATCATCCACAAAAAGGATCCTGCTGCAGTTCAACGAATAAAACATAAGgtgatttttagagcatttaatatcttgatttttcctgttctaggtaatccaagctttgtaacctatgaactatgatgttattatccttttctcctattat...
species | Zea mays |
transcript | GRMZM2G308570_T02 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: AGATCATCCACAAAAAGGATCCTGCTGCAGTTCAACGAATAANACATAAG GAAGTATATGAACAACAEST: gi|93283332|gb|EB675596.1|EB675596
genomic: AGATCATCCACAAAAAGGATCCTGCTGCAGTTCAACGAATAAAACATAAGgtgattttta ... ctttcttcagGAAGTATATGAACAACA
EST: GATCATCCACAAAAAAGGATCCTGCTGCAGTTCACCGAATAAAACATAAG GGAGTATATGAACAACAGAAGGAACTTATTTTTACTTGGGGAEST: gi|78111792|gb|DV530189.1|DV530189
genomic: GATCATCCACAAAAA-GGATCCTGCTGCAGTTCAACGAATAAAACATAAGgtgattttta ... ctttcttcagGAAGTATATGAACAACAGAAGGAACTTATTTT-ACTTGGGGA
EST: AGATCATCCACAAAAAGGATCCTGCTGCAGTTCAACGAATAAAACATAAG GAAGTATATGAACAACAGAAGGAACTTATTTTACTGGGGGAACGTGTTGTTEST: gi|149102056|gb|EE287526.2|EE287526
genomic: AGATCATCCACAAAAAGGATCCTGCTGCAGTTCAACGAATAAAACATAAGgtgattttta ... ctttcttcagGAAGTATATGAACAACAGAAGGAACTTATTTTACTTGGGGAACGTGTTGTT
EST: AGATCATCCACAAAAAGGATCCTGCTGCAGTTCAACGAATAANACATAAG GAAGTATATGAACAACAGAAGGAACTTATTTTACTTGGGGGACGTGTTGTT
genomic: AGATCATCCACAAAAAGGATCCTGCTGCAGTTCAACGAATAAAACATAAGgtgattttta ... ctttcttcagGAAGTATATGAACAACAGAAGGAACTTATTTTACTTGGGGAACGTGTTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTGAAGAAACACCCAGACCTCTGAAGGATGTCATACTTCTTTCATACGAGATCATCCACAAAAAGGATCCTGCTGCAGTTCAACGAATAAAACATAAGgtgatttttagagcatttaatatcttgatttttcctgttctaggtaatccaagctttgtaacctatgaactatgatgttattatccttttctcctattat
- - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG