1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
TATATTCGAAACTATCTACTATCATGCTCTGAAAGCTTCTGCTGAACTTGCTGCTAAAGAAGGTCCCTATGAAACATATGAAGGGAGCCCTGTCAGCAAGgttttactttctgcttttcaataacttacgctttgtgtcatgatatttatgttcatgatgaagatttctgtttgtttcattctcaaattcctatgcattgaccttaatagctaaagcatgctccctacctgctttctag
species | Zea mays |
transcript | GRMZM2G304362_T01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: ATATGAAGGGAGCCCTGTCAGCAAG GGCATTCTCCAACCTGACATGTGGGATGTAGTGCCATCTAACAGATGGAACEST: gi|32934636|gb|CF039448.1|CF039448
genomic: ATATGAAGGGAGCCCTGTCAGCAAGgttttacttt ... tgctttctagGGCATTCTCCAACCTGACATGTGGGATGTAGTGCCATCTAACAGATGGAAC
EST: CTGCTAAAGAAGGTCCCTATGAAACATATGAAGGGAGCCCTGTCAGCAAG GGCATTCTCCAACCTGACATGTGGGATGTAGTGCCATCTAACAGATGGAACEST: gi|211165343|gb|FL103231.1|FL103231
genomic: CTGCTAAAGAAGGTCCCTATGAAACATATGAAGGGAGCCCTGTCAGCAAGgttttacttt ... tgctttctagGGCATTCTCCAACCTGACATGTGGGATGTAGTGCCATCTAACAGATGGAAC
EST: CTGCTAAAGAAGGTCCCTATGAAACTTATGAAGGGAGCCCTGTCAGCAAG GGCATTCTCCAACCTGACATGTGGGATGTAGTGCCATCTAACAGATGGAACEST: gi|211165341|gb|FL103229.1|FL103229
genomic: CTGCTAAAGAAGGTCCCTATGAAACATATGAAGGGAGCCCTGTCAGCAAGgttttacttt ... tgctttctagGGCATTCTCCAACCTGACATGTGGGATGTAGTGCCATCTAACAGATGGAAC
EST: CTGCTAAAGAAGGTCCCTATGAAACTTATGAAGGGAGCCCTGTCAGCAAG GGCATTCTCCAACCTGACATGTGGGATGTAGTGCCATCTAACAGATGGAACEST: gi|33098100|gb|CF058060.1|CF058060
genomic: CTGCTAAAGAAGGTCCCTATGAAACATATGAAGGGAGCCCTGTCAGCAAGgttttacttt ... tgctttctagGGCATTCTCCAACCTGACATGTGGGATGTAGTGCCATCTAACAGATGGAAC
EST: CTGCTAAAGAAGGTCCCTATGAAACATATGAAGGGAGCCCTGTCAGCAAG GGCATTCTCCAACCTGACATGTGGGATGTAGEST: gi|32934774|gb|CF039586.1|CF039586
genomic: CTGCTAAAGAAGGTCCCTATGAAACATATGAAGGGAGCCCTGTCAGCAAGgttttacttt ... tgctttctagGGCATTCTCCAACCTGACATGTGGGATGTAG
EST: CTGCTAAAGAAGGTCCCTATGAAACATATGAAGGGAGCCCTGTCAGCAAG GGCATTCTCCAACCTGACATGTGGGATGTAGTGCCATCTAACAGATGGAACEST: gi|5895790|gb|AW037036.1|AW037036
genomic: CTGCTAAAGAAGGTCCCTATGAAACATATGAAGGGAGCCCTGTCAGCAAGgttttacttt ... tgctttctagGGCATTCTCCAACCTGACATGTGGGATGTAGTGCCATCTAACAGATGGAAC
EST: CTGCTAAAGAAGGTCCCTATGAAACGTATGAAGGGAGCCCTGTCAGCAAG GGCATTCTCCAACCTGACATGTGGGATGTAGTGCCATCTAACAGATGGAACEST: gi|29577171|gb|CB617283.1|CB617283
genomic: CTGCTAAAGAAGGTCCCTATGAAACATATGAAGGGAGCCCTGTCAGCAAGgttttacttt ... tgctttctagGGCATTCTCCAACCTGACATGTGGGATGTAGTGCCATCTAACAGATGGAAC
EST: CCTGTCAGCAAG GGCATTCTCCAACCTGACATGTGGGATGTAGTGCCATCTAACAGATGGAACEST: gi|32931555|gb|CF036367.1|CF036367
genomic: CCTGTCAGCAAGgttttacttt ... tgctttctagGGCATTCTCCAACCTGACATGTGGGATGTAGTGCCATCTAACAGATGGAAC
EST: CTGCTAAAGAAGGTCCCTATGAAACATATGAAGGGAGCCCTGTCAGCAAG GGCATTCTCCAACCTGACATGTGGGATGTAGTGCCATCTAACAGATGGAACEST: gi|33094392|gb|CF054386.1|CF054386
genomic: CTGCTAAAGAAGGTCCCTATGAAACATATGAAGGGAGCCCTGTCAGCAAGgttttacttt ... tgctttctagGGCATTCTCCAACCTGACATGTGGGATGTAGTGCCATCTAACAGATGGAAC
EST: GCCCTGTCAGCAAG GGCATTCTCCAACCTGACATGTGGGATGTAGTGCCATCTAACAGATGGAACEST: gi|32935070|gb|CF039882.1|CF039882
genomic: GCCCTGTCAGCAAGgttttacttt ... tgctttctagGGCATTCTCCAACCTGACATGTGGGATGTAGTGCCATCTAACAGATGGAAC
EST: TCCCTATGAAACATATGAAGGGAGCCCTGTCAGCAAG GGCATTCTCCAACCTGACATGTGGGATGTAGTGCCATCTAACAGATGGAACEST: gi|211165335|gb|FL103223.1|FL103223
genomic: TCCCTATGAAACATATGAAGGGAGCCCTGTCAGCAAGgttttacttt ... tgctttctagGGCATTCTCCAACCTGACATGTGGGATGTAGTGCCATCTAACAGATGGAAC
EST: CTGCTNAAGAAGGTCCCTATGAAACTTATGAAGGGAGCCCTGTCAGCAAG GGCATTCTCCAACCTGACATGTGGGATGTAGTGCCATCTAACAGATGGAACEST: gi|32930756|gb|CF035568.1|CF035568
genomic: CTGCTAAAGAAGGTCCCTATGAAACATATGAAGGGAGCCCTGTCAGCAAGgttttacttt ... tgctttctagGGCATTCTCCAACCTGACATGTGGGATGTAGTGCCATCTAACAGATGGAAC
EST: CTGCTAAAGAAGGTCCCTATGAAACATATGAAGGGAGCCCTGTCAGCAAG GGCATTCTCCAACCTEST: gi|211165338|gb|FL103226.1|FL103226
genomic: CTGCTAAAGAAGGTCCCTATGAAACATATGAAGGGAGCCCTGTCAGCAAGgttttacttt ... tgctttctagGGCATTCTCCAACCT
EST: CTGCTAAAGAAGGTCCCTATGAAACGTATGAAGGGAGCCCTGTCAGCAAG GGCATTCTCCAACCTGACATGTGGGATGTAGTGCCATCTAACAGATGGAACEST: gi|32932118|gb|CF036930.1|CF036930
genomic: CTGCTAAAGAAGGTCCCTATGAAACATATGAAGGGAGCCCTGTCAGCAAGgttttacttt ... tgctttctagGGCATTCTCCAACCTGACATGTGGGATGTAGTGCCATCTAACAGATGGAAC
EST: CTGCTAAAGAAGGTCCCTATGAAACATATGAAGGGAGCCCTGTCAGCAAG GGCATTCTCCAACCTGACATGTGGGATGTAGTGCCATCTAACAGATGGAAC
genomic: CTGCTAAAGAAGGTCCCTATGAAACATATGAAGGGAGCCCTGTCAGCAAGgttttacttt ... tgctttctagGGCATTCTCCAACCTGACATGTGGGATGTAGTGCCATCTAACAGATGGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATATTCGAAACTATCTACTATCATGCTCTGAAAGCTTCTGCTGAACTTGCTGCTAAAGAAGGTCCCTATGAAACATATGAAGGGAGCCCTGTCAGCAAGgttttactttctgcttttcaataacttacgctttgtgtcatgatatttatgttcatgatgaagatttctgtttgtttcattctcaaattcctatgcattgaccttaatagctaaagcatgctccctacctgctttctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG