1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TGAAGAGCTTGAGAAAATAGCAATTGTTCGTCTACTTCAGCAGAGGGCGATAATTTCACTTATCGGAAATGTGGAGCAATCGTCTCTCATACTAGAAAAGgtataacgctatctacattaaatatttcttctttgggttttcctctctaatgttattttcattggacatcagcatatatattaaccatttaataaatcttcag
species | Zea mays |
transcript | GRMZM2G300862_T01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TAATTTCACTTATCGGAAATGTGGAGCAATCGTCTCTCATACTAGAAAAG ACGGGACGTGTGCTGAGGAAAAGTGGGGTTAATGTTCAGATGATCTCGCAAEST: gi|89249156|gb|DY620942.1|DY620942
genomic: TAATTTCACTTATCGGAAATGTGGAGCAATCGTCTCTCATACTAGAAAAGgtataacgct ... aaatcttcagACGGGACGTGTGCTGAGGAAAAGTGGGGTTAATGTTCAGATGATCTCGCAA
EST: TAATTTCACTTATCGGAAATGTGGAGCAATCGTCTCTCATACTAGAAAAG ACGGGACGTGTGCTGAGGAAAAGTGGGGTTAATGTTCAGATGATCTCGCAAEST: gi|50338979|gb|CO534105.1|CO534105
genomic: TAATTTCACTTATCGGAAATGTGGAGCAATCGTCTCTCATACTAGAAAAGgtataacgct ... aaatcttcagACGGGACGTGTGCTGAGGAAAAGTGGGGTTAATGTTCAGATGATCTCGCAA
EST: TAATTTCACTTATCGGAAATGTGGAGCAATCGTCTCTCATACTAGAAAAG ACGGGACGTGTGCTGAGGAAAAGTGGGGTTAATGTTCAGATGATCTCGCAAEST: gi|32807954|gb|CD960188.1|CD960188
genomic: TAATTTCACTTATCGGAAATGTGGAGCAATCGTCTCTCATACTAGAAAAGgtataacgct ... aaatcttcagACGGGACGTGTGCTGAGGAAAAGTGGGGTTAATGTTCAGATGATCTCGCAA
EST: TAATTTCACTTATCGGAAATGTGGAGCAATCGTCTCTCATACTAGAAAAG ACGGGACGTGTGCTGAGGAAAAGTGGGGTTAEST: gi|5607844|gb|AI901511.1|AI901511
genomic: TAATTTCACTTATCGGAAATGTGGAGCAATCGTCTCTCATACTAGAAAAGgtataacgct ... aaatcttcagACGGGACGTGTGCTGAGGAAAAGTGGGGTTA
EST: TAATTTCCCTTATCGGAAATGTGGAGCAATCGTCTCTCATACTAGAAAAG ACGGGCCGTGTGCTGAGGAAAAGTGGGGTTAATGTTCAGATGATCTCGCAAEST: gi|76911222|gb|DV164206.1|DV164206
genomic: TAATTTCACTTATCGGAAATGTGGAGCAATCGTCTCTCATACTAGAAAAGgtataacgct ... aaatcttcagACGGGACGTGTGCTGAGGAAAAGTGGGGTTAATGTTCAGATGATCTCGCAA
EST: TAATTTCACTTATCGGAAATGTGGAGCAATCGTCTTTCATACTAGAAAAG ACGGGACGTGTGCTGAGGAAAAGTGGGGTTAATGTTCAGATGATCTCGCAA
genomic: TAATTTCACTTATCGGAAATGTGGAGCAATCGTCTCTCATACTAGAAAAGgtataacgct ... aaatcttcagACGGGACGTGTGCTGAGGAAAAGTGGGGTTAATGTTCAGATGATCTCGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAAGAGCTTGAGAAAATAGCAATTGTTCGTCTACTTCAGCAGAGGGCGATAATTTCACTTATCGGAAATGTGGAGCAATCGTCTCTCATACTAGAAAAGgtataacgctatctacattaaatatttcttctttgggttttcctctctaatgttattttcattggacatcagcatatatattaaccatttaataaatcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA