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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataagttttctgtatgttttcagcatttatgttgaaggttagttgtaagaaccacttaacaactcctgcag

Basic information

species Zea mays
transcript GRMZM2G181151_T02
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 12
ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataagttttctgtatgttttcagcat---------ttat----gttgaaggtta-----------------gttgtaagaaccacttaacaactcctgcag
|| || ||||| ||||||||| |||||||||| ||||||||||||||||| |||| | |  ||  |||   ||   |||         | ||    |||  | | ||                 ||| |||||||    ||| || || |||||
ATATACCCACCCATCAATGTCTTGCCATCTCTCTCTCGATTGATGAAGgtgagattactcatcaatataaatttcacataaactggtttcataacagttacatgctacaataatttccatttgcgttctaagaactgtctaataattcttgcag

upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA10G42940.2 (Glycine max), 5'ss of exon 12
ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataagttt--tctgtatgttttcagcatttatgttgaaggttagttgtaagaaccacttaacaactcctgcag------------------------------------------
|| || ||||| ||||||||||| || || |||||||| |||||||||||||| | | | |  | ||| || | |||   |     || || || |    ||    |   ||   || |   |||                                           
ATATACCCACCAATCAATGTCCTCCCGTCACTATCTCGGTTGATGAAGgtaaggttaatctcgtttgtttgatatcaaggtgc---tttaaagtgataaatattttctgtttcttaattaaagcaagtggttcacacactaaaggtgcatcattggtcacttttgcag

upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA20G24070.1 (Glycine max), 5'ss of exon 13
ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataagttttctgtatgttttcagcatttatg-ttgaaggttagttgtaagaaccacttaacaactcctgcag-------------------------------------------
|| || ||||| ||||| ||||| ||||| |||||||| ||||||||||||||   | | ||  |  |||||      |   || || || || |    ||    |   ||   || |  ||||                                            
ATATACCCACCAATCAACGTCCTCCCATCACTATCTCGGTTGATGAAGgtaaggataatctt--gcttgtttgatatctaggtgctttaaagtgataaatattttctgattcttaattaatgcaaagtggttcacgctctaatggtgcatcattggtcacttctgcag

upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 12
lower sequence: PP1S425_12V6.1 (Physcomitrella patens), 5'ss of exon 11
ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataagttttctgtatgtttt-cagcatttatgttgaaggttagttgtaagaac-cacttaacaac-tcctgcag---------------------
|| || || ||||| ||||| ||||||||||| |||||| ||||||||||  |||      ||||  |    |  |   || | || | ||  | | | |   | |   ||  || |  |  ||                        
ATCTACCCGCCTATTAATGTTCTGCCATCTCTGTCTCGACTGATGAAGgtgcgatcctacatctgcgtacaatatattcttcaagtggtagaatggatattgtatcatgctagacgatattttgtgtgtatttactctacttggatgc

upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 12
lower sequence: PP1S85_75V6.1 (Physcomitrella patens), 5'ss of exon 11
ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataagttttctgtatgttttcagcatttatgttgaaggttagttgtaagaaccacttaacaactcctgcag-------------------------
|| || |||||||||||||| ||||||||||| || ||||||||||||||  |     | |  | |||  || |     |||||   |  |||   | ||    |    ||   | || |||                           
ATCTACCCACCTATCAATGTGCTGCCATCTCTGTCGCGATTGATGAAGgtgcggcct-tatattatatccttgcgtttgttatgaccagcgttttctttatcttcagtatacttattcgtgcccactacatttttcaagtcacagagtg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60355003|gb|DN221976.1|DN221976
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|16925493|gb|BM078561.1|BM078561
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|4646659|gb|AI491497.2|AI491497
EST:     CTATCAATGTCCTGCCATCTCTATTTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: CTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|32945219|gb|CF050038.1|CF050038
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|211017023|gb|FL053488.1|FL053488
EST:     CGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: CGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|60343435|gb|DN210408.1|DN210408
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|211222466|gb|FL437622.1|FL437622
EST:     AGATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: AGATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|60352479|gb|DN219452.1|DN219452
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|6973468|gb|AW438162.1|AW438162
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|211122809|gb|FL454319.1|FL454319
EST:     TCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: TCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|67019767|gb|CO448516.1|CO448516
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|33101769|gb|CF061729.1|CF061729
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCCCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|194716931|gb|FK934090.1|FK934090
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|211222467|gb|FL437623.1|FL437623
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|60394888|gb|DN227757.1|DN227757
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|67015926|gb|CO444675.1|CO444675
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|33101431|gb|CF061391.1|CF061391
EST:     ATTTATCCACCTATCAATGCCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACGCGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|30307203|gb|CD001876.1|CD001876
EST:     AGATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: AGATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|213188201|gb|FM181912.1|FM181912
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|60395817|gb|DN228687.1|DN228687
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|24767815|gb|CA402951.1|CA402951
EST:     ATTTATCCACCTATCAATGTCCTGCCGTCTCTCTCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCAGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|6563648|gb|AW231375.1|AW231375
EST:     CTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: CTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|4646712|gb|AI491575.2|AI491575
EST:     CTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGGCACGTAGAGACCATTCGGATGTGTCTAAT
genomic: CTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|32944615|gb|CF049434.1|CF049434
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|60396754|gb|DN229618.1|DN229618
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|37401251|gb|CF637988.1|CF637988
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|211019798|gb|FL053491.1|FL053491
EST:     CTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: CTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|33094143|gb|CF054137.1|CF054137
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|32933748|gb|CF038560.1|CF038560
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|32942169|gb|CF046988.1|CF046988
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|32931582|gb|CF036394.1|CF036394
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|211222468|gb|FL437624.1|FL437624
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT