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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACATGCTGAAACTTGGGTTTTTGATGTTCTACAATGTAAATGGTCTGTTTGTGTAGTGCCCCCTAGTTCATCGATTACTACAAAAAAAgtaagtgttttttttctttgtgactctcatatttagttttgatagtatctcgtactcgctactttccattctacaccactttcatctaattagccagaaaactaaaacaactatcgatgcag

Basic information

species Zea mays
transcript GRMZM2G174830_T01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G174830_T01 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os12g35350.1 (Oryza sativa), 5'ss of exon 12
GACATGCTGAAACTTGGGTTTTTGATGTTCTACAATGTAAATGGTCTGTTTGTGTAGTGCCCCCTAGTTCATCGATTACTACAAAAAAAgtaagtgttttttttctttgtgactctcatatttagttttgatagtatctcgtactcgctactttccattctacaccactttcatctaattagccagaaaactaaaacaactatcgatgcag
| ||||| ||||| |||| |||||||||| || ||| ||| ||||| || |||||||| ||||||||||| |||||| ||||||| |||||||||  ||||     |||  |||||  |  |     |  |||  || |  ||||   |   |   |   | || |  ||      || |   |  | ||                     
GGCATGCAGAAACCTGGGCTTTTGATGTTGTAGAATATAAGTGGTCGGTATGTGTAGTACCCCCTAGTTCCTCGATTGCTACAAAGAAAgtaagttcttttcaatcttgacactcttgttatggaaataaatataattt--tactaaatcagtggaaaaatgcatctgttaatgtcaacttttctcataat--------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|160481594|gb|EY254426.1|EY254426
EST:     AATGGTCTGTTTGTGTAGTGCCCCCTAGTTCATCGATTACTACNNNNNNN                         GGTTTTAGCATGGTTCCTTTCTACCACAAGGACAAGATTGCTCTTATTGCA
genomic: AATGGTCTGTTTGTGTAGTGCCCCCTAGTTCATCGATTACTACAAAAAAAgtaagtgttt ... atcgatgcagGGTTTTAGCATGGTTCCTTTCTACCACAAGGACAAGATTGCTCTTATTGCA
EST: gi|60340595|gb|DN207568.1|DN207568
EST:     AATGGTCTGTTTGTGTAGTGCCCCCTAGTTCATCGATTACTACNNNNNNN                         GGTTTTAGCATGGTTCCTTTCTACCACAAGGACAAGATTGCTCTTATTGCA
genomic: AATGGTCTGTTTGTGTAGTGCCCCCTAGTTCATCGATTACTACAAAAAAAgtaagtgttt ... atcgatgcagGGTTTTAGCATGGTTCCTTTCTACCACAAGGACAAGATTGCTCTTATTGCA
EST: gi|91873012|gb|EB402969.1|EB402969
EST:     AATGGTCTGTTTGTGTAGTGCCCCCTAGTTCATCGATTACTACNNNNNNN                         GGTTTTAGCATGGTTCCTTTCTACCACAAGGACAAGATTGCTCTTATTGCA
genomic: AATGGTCTGTTTGTGTAGTGCCCCCTAGTTCATCGATTACTACAAAAAAAgtaagtgttt ... atcgatgcagGGTTTTAGCATGGTTCCTTTCTACCACAAGGACAAGATTGCTCTTATTGCA