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TGTAGCATATGCTAAAAGTACACATGGACCTGCATCAGGGGGTTCTCAGTCAAACAGCCTTGCTGCAGCTGCCATTGAGGCTGCATCATTTGCTCAGCAGgtttgttatagctcttgacactgtaagattatgcatttaccatttctatttatataagatatccattacatattacttcctttgtcatttctcacagtat...
species | Zea mays |
transcript | GRMZM2G173777_T01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CAAACAGCCTTGCTGCAGCTGCCATTGAGGCTGCATCATTTGCTCAGCAG TATGATGCCATAGGTTGGGCTCCAAAAGAGTACAATCCTGATGACAAACAGEST: gi|211224726|gb|FL222444.1|FL222444
genomic: CAAACAGCCTTGCTGCAGCTGCCATTGAGGCTGCATCATTTGCTCAGCAGgtttgttata ... gttggaccagTATGATGCCATAGGTTGGGCTCCAAAAGAGTACAATCCTGATGACAAACAG
EST: CAAACAGCCTTGCTGCAGCTGCCATTGAGGCTGCATCATTTGCTCAGCAG TATGATGCCATAGGTTGGGCTCCAAAAGAGTACAATCCTGATGACAAACAGEST: gi|211344310|gb|FL081281.1|FL081281
genomic: CAAACAGCCTTGCTGCAGCTGCCATTGAGGCTGCATCATTTGCTCAGCAGgtttgttata ... gttggaccagTATGATGCCATAGGTTGGGCTCCAAAAGAGTACAATCCTGATGACAAACAG
EST: CAAACAGCCTTGCTGCAGCTGCCATTGAGGCTGCATCATTTGCTCAGCAG TATGATGCCATAGGTTGGGCTCCAAAAGAGTACAATCCTGATGACAAACAGEST: gi|211344311|gb|FL081282.1|FL081282
genomic: CAAACAGCCTTGCTGCAGCTGCCATTGAGGCTGCATCATTTGCTCAGCAGgtttgttata ... gttggaccagTATGATGCCATAGGTTGGGCTCCAAAAGAGTACAATCCTGATGACAAACAG
EST: CAAACAGCCTTGCTGCAGCTGCCATTGAGGCTGCATCATTTGCTCAGCAG TATGATGCCATAGGTTGGGCTCCAAAAGAGTACAATCCTGATGACAAACAGEST: gi|13490949|gb|BG517713.1|BG517713
genomic: CAAACAGCCTTGCTGCAGCTGCCATTGAGGCTGCATCATTTGCTCAGCAGgtttgttata ... gttggaccagTATGATGCCATAGGTTGGGCTCCAAAAGAGTACAATCCTGATGACAAACAG
EST: CAAACAGCCTTGCTGCAGCTGCCATTGAGGCTGCATCATTTGCTCAGCAG TATGATGCCATAGGTTGGGCTCCAAAAGAGTACAATCCTGATGACAAACAG
genomic: CAAACAGCCTTGCTGCAGCTGCCATTGAGGCTGCATCATTTGCTCAGCAGgtttgttata ... gttggaccagTATGATGCCATAGGTTGGGCTCCAAAAGAGTACAATCCTGATGACAAACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTAGCATATGCTAAAAGTACACATGGACCTGCATCAGGGGGTTCTCAGTCAAACAGCCTTGCTGCAGCTGCCATTGAGGCTGCATCATTTGCTCAGCAGgtttgttatagctcttgacactgtaagattatgcatttaccatttctatttatataagatatccattacatattacttcctttgtcatttctcacagtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC